PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10007337m
Common NameCARUB_v10007337mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 234aa    MW: 27000.2 Da    PI: 9.4502
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10007337mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.12e-1356103148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W + Ed +l + v+q+ g   W++Ia+ +  gRt+kqc++rw+++l
  Carubv10007337m  56 KGKWAKSEDMKLNQMVEQYDGIvKWTSIAKNLK-GRTGKQCRERWHNHL 103
                      79******************88**********9.*************97 PP
2Myb_DNA-binding48.71.8e-15110151245
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       +WT+eE ++lv ++k  G++ W +I+++++ gRt++++k+rw+
  Carubv10007337m 110 TAWTEEENQILVAVHKVVGTK-WYSISQHLP-GRTENNIKNRWN 151
                      68*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.45E-84299IPR009057Homeodomain-like
PROSITE profilePS5129414.9351103IPR017930Myb domain
SMARTSM007178.2E-1255105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2457110IPR009057Homeodomain-like
CDDcd001673.19E-1158103No hitNo description
PfamPF139218.9E-1559116No hitNo description
SuperFamilySSF466891.15E-2783161IPR009057Homeodomain-like
PROSITE profilePS5129423.184104158IPR017930Myb domain
SMARTSM007173.8E-13108156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-20111156IPR009057Homeodomain-like
CDDcd001674.97E-9111154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGEPQSFDMP VPEDIKNTTS DIMNQGEGQK MVRTHQKKNK KIVETSNHSK ETNIIKGKWA  60
KSEDMKLNQM VEQYDGIVKW TSIAKNLKGR TGKQCRERWH NHLRPGIKKT AWTEEENQIL  120
VAVHKVVGTK WYSISQHLPG RTENNIKNRW NATKRRVQNQ SGENSNLADN NVLENYIRYV  180
TINNDNLSKT TEDVNLNMDV GTQTNEPLVN ASTTSYYVPM PENFTWENYI TEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-38531564106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10007337m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285855.21e-171transcription factor MYB115
TrEMBLR0H5C91e-172R0H5C9_9BRAS; Uncharacterized protein
STRINGXP_006285855.11e-172(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133031427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40430.17e-85myb domain protein 22