PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10007409m
Common NameCARUB_v10007409mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 178aa    MW: 20505.5 Da    PI: 9.4538
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10007409mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind44.15.7e-1418103199
                      HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
     HSF_DNA-bind   1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                      +Fl+k y +++d+++ ++isw  ng+sf+v++  e  +++Lp+ F  + f  F  QL+  gFkkv + +          e++ + F kg+ ell
  Carubv10007409m  18 EFLSKAYAMVDDPSTGSIISWGFNGDSFIVWNLPECRRDLLPRLFGINDFGKF--QLH--GFKKVASAH---------LEYARDDFVKGRPELL 98 
                      69************************************************999..665..******999.........78************** PP

                      XXXXX CS
     HSF_DNA-bind  95 ekikr 99 
                      eki +
  Carubv10007409m  99 EKIAQ 103
                      **976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.6E-181198IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.9E-2015104IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.8E-1716101IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.3E-1319103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-51942IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-55769IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MTDHGAAVSV TKKKECLEFL SKAYAMVDDP STGSIISWGF NGDSFIVWNL PECRRDLLPR  60
LFGINDFGKF QLHGFKKVAS AHLEYARDDF VKGRPELLEK IAQSFYDKRE KKMKPLRDAL  120
RNCKKDEDLK VTKEWLASQE RERRDQVDKD LLKNADLLLL SISREKERRA HALATFN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10007409m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285897.11e-128heat stress transcription factor A-4a isoform X2
TrEMBLR0H2A21e-127R0H2A2_9BRAS; Uncharacterized protein
STRINGXP_006285897.11e-128(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142121123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.12e-21heat shock factor 1