PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10007629m
Common NameCARUB_v10007629mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GeBP
Protein Properties Length: 157aa    MW: 17812.2 Da    PI: 4.4604
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10007629mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57333.51.2e-109551864
           DUF573 18 GlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkK 64
                     G+++++++t++ + +d+dafy ++++s+ +++sk q++ K   LK+ 
  Carubv10007629m  9 GILEYQSETETCYNQDWDAFYGYIRESMRSDFSKAQIMGKCLVLKEE 55
                     99**************************************9999975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MNLMRTSPGI LEYQSETETC YNQDWDAFYG YIRESMRSDF SKAQIMGKCL VLKEEDVPCA  60
ENERVVGNEN TKIDNVEEED GADDLCVIKN ALEAAASYRS LSEDLRKVLF RKLKNVGADR  120
RKELADGWKA LFAADMELDI KKRDFFAMLL NLGFSA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10007629m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019089206.12e-47PREDICTED: GLABROUS1 enhancer-binding protein-like
TrEMBLR0GQ381e-110R0GQ38_9BRAS; Uncharacterized protein
STRINGXP_006286086.11e-111(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14516816
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36340.13e-15DNA-binding storekeeper protein-related transcriptional regulator