PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10007768m
Common NameCARUB_v10007768mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 168aa    MW: 19868.9 Da    PI: 9.7027
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10007768mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind40.66.8e-1332115297
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+++y++++++ ++++ sws++g+sf+++++++f+  ++  y++ +n+  ++  L  YgFk+v  e+          e+++++F +g+++l++
  Carubv10007768m  32 FLTRTYNMVDNHIMDSIASWSQSGKSFIIWNPKKFTA-LVLFYYRFENLLPLI--LSGYGFKRVGFER---------HEYANDNFVRGHHRLMK 113
                      99***********************************.55679******9998..9********9999.........57*************99 PP

                      XX CS
     HSF_DNA-bind  96 ki 97 
                      +i
  Carubv10007768m 114 NI 115
                      98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.1E-1030118IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.7E-1531113IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.5E-1232115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.24E-1232115IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MMSTKTYLGF TAPSEYNKLR MLDDYRDIDD CFLTRTYNMV DNHIMDSIAS WSQSGKSFII  60
WNPKKFTALV LFYYRFENLL PLILSGYGFK RVGFERHEYA NDNFVRGHHR LMKNIPTPNL  120
FTTQESIMNR IGRLTKERNE LIGELHKQEI QIKELKHRLQ HQGVCKL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10007768m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotO494031e-23HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLR0H3601e-123R0H360_9BRAS; Uncharacterized protein
STRINGXP_006286202.11e-124(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1954256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.15e-26heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]