PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10007820m
Common NameCARUB_v10007820mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family FAR1
Protein Properties Length: 410aa    MW: 47543.7 Da    PI: 6.5129
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10007820mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR128.26.4e-09102145247
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 
                       Y++++ e GF+vrk++ kk+  n+e+++  +vCskeg+r+e k +
  Carubv10007820m 102 AYKKFGGEHGFNVRKQRRKKK--NNEVVRLLYVCSKEGFRKEPKIH 145
                      59************9986665..888***************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.1E-6102150IPR004330FAR1 DNA binding domain
PfamPF105513.7E-11155197IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MESNHEIVLV DQNESRLQVS GEPGFLSQKQ FEFQPEEIYD SISEDEASVN EFKEKEEDDI  60
AIKEGYVKTE EISTLQPNTE NKKKNELCIG MEFSSNETAY DAYKKFGGEH GFNVRKQRRK  120
KKNNEVVRLL YVCSKEGFRK EPKIHVIHNQ LHDQSAAMSG KQPKTILTDE SAAMSNAIVK  180
VFPEIKHRLC VWNIYQNAAK KLSHVFHGPG HSIIDFGKCV YDHEEEVGWL LAWSNMLEKH  240
NLRENKWLQN VFDAMVYGRH TFTADMVSTQ RSESMNNILK RYLKSSYDLL SFFEHYERVF  300
DDRRYNELIA DFKIMHTSSV LSTTVEMLQH AEEVYTPEIF CLFQKQYTVT GDYVAKKVSK  360
SEMVNEYKVS YRGGPQEYLV NYDAINQAIQ CSSMKYSFAG ILCRHALKV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10007820m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020877186.11e-158protein FAR1-RELATED SEQUENCE 5-like
TrEMBLR0H6H20.0R0H6H2_9BRAS; Uncharacterized protein
STRINGXP_006286250.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-45FAR1-related sequence 5