PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10007822m

Common Name

CARUB_v10007822mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

SAP

Protein Properties

Length: 72aa MW: 7292.89 Da PI: 4.4016

Description

SAP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10007822m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SAP	75.8	6.2e-24	2	72	2	78
SAP 2 ssssssssseseegseggeggdassgesegpsssrqr.aanevwpePflealatqvaidasrslGrlaaasalanvfq 78 sssssss++ g+ g++ + g +++ps sr+r an+vwpePfle+la+qva+das+s+G l+aa+alanvf+ Carubv10007822m 2 SSSSSSSNN----GD---PGSGDTRGVFDAPSPSRPRrGANDVWPEPFLESLAVQVAVDASSSSGLLSAAPALANVFR 72 444443332....32...3334455789999999988799*************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 72 aa Download sequence Send to blast
MSSSSSSSNN GDPGSGDTRG VFDAPSPSRP RRGANDVWPE PFLESLAVQV AVDASSSSGL 60 LSAAPALANV FR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10007822m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006285619.2	1e-39	transcriptional regulator STERILE APETALA
Swissprot	Q9FKH1	1e-20	SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBL	A0A1I9XFY4	9e-39	A0A1I9XFY4_9BRAS; Uncharacterized protein
TrEMBL	A0A1I9XFY5	9e-39	A0A1I9XFY5_9BRAS; Uncharacterized protein
TrEMBL	R0F3E3	3e-41	R0F3E3_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_006282968.1	5e-42	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24056	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35770.1	1e-13	SAP family protein

Link Out ? help Back to Top
Phytozome	Carubv10007822m
Entrez Gene	17877602

Publications ? help Back to Top
Li N, et al. STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana. PLoS Genet., 2018. 14(2): p. e1007218 [PMID:29401459]