PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10007858m
Common NameCARUB_v10007858mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ARR-B
Protein Properties Length: 528aa    MW: 59979.6 Da    PI: 6.7175
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10007858mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like65.59.1e-21208261155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+++ Wt  L + F++a++++ G +kA+Pk+il +m+v+ Lt+e+v+SHLQkYR+
  Carubv10007858m 208 KAKIIWTDSLQNLFLQAIRHI-GLDKAVPKKILAFMNVPYLTRENVASHLQKYRI 261
                      67999****************.********************************7 PP
2Response_reg60.77.5e-21181331109
                      EEEESSSHHHHHHHHHHHHHTTC........EEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHH CS
     Response_reg   1 vlivdDeplvrellrqalekegy........eevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeee 84 
                      +++ dD+p+++e++ ++lek++y        +++ae d   +a+ +l  +++++Dli++D  m+ m+Gl+l+++i++e  +lp+iv+++  +  
  Carubv10007858m  18 IMVLDDDPVFLEVISRMLEKSKYrdpsimdiRVIAEGDP-LKAMSTLklQRNNIDLIIIDYYMSCMNGLQLISKITKEFGNLPVIVMSSDTN-- 108
                      7999***************88885555532233333333.3444444336666**********************99999********7766.. PP

                      HHHHHHHTTESEEEESS--HHHHHH CS
     Response_reg  85 dalealkaGakdflsKpfdpeelvk 109
                        +e l  Ga+ fl+Kp++p +l k
  Carubv10007858m 109 KEQESLTCGAMCFLAKPIKPIDLPK 133
                      7799****************99977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.5E-2215144No hitNo description
SMARTSM004483.2E-1716135IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521721.05E-2016143IPR011006CheY-like superfamily
PROSITE profilePS5011030.13217139IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.5E-1718134IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.46E-2019131No hitNo description
SuperFamilySSF466894.66E-17206265IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.6E-23206265IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-23208261IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MAFGESFHNQ SSVLRINIMV LDDDPVFLEV ISRMLEKSKY RDPSIMDIRV IAEGDPLKAM  60
STLKLQRNNI DLIIIDYYMS CMNGLQLISK ITKEFGNLPV IVMSSDTNKE QESLTCGAMC  120
FLAKPIKPID LPKIYQIALT SKRNGKSWSE PNHKMLHGQD NALKTRNKCS SNTNASCLST  180
NGSRQNLKRR PNGCLVEDGE SSSRPSKKAK IIWTDSLQNL FLQAIRHIGL DKAVPKKILA  240
FMNVPYLTRE NVASHLQKYR IYLKRVAENG MVSIMSGRSS IESMFRYAHI KEPCFNNYTH  300
VPSWYDTSLN NRSFYSKTEH GFAQSRLLSD TSAPVHFNQM PYNYMNRPST YEPQHIGAGS  360
NSTLPIQRNL SVPNQPSQNE ERRSFFEQHE MANIINQTSQ VHGLGNNVNN SMMSTFGSFT  420
PNQPGLSHFS YENTAHNPQL GMTNELPYNI SNFEFDHNKQ QHEGEEASTK FDLSDELNQI  480
LSLEDDGDWF VNVDQAQDIN PDIRDCSILD TQVDDDFMNS IFNSFMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-19207267464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10007858m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023634260.10.0putative two-component response regulator ARR21
SwissprotQ9LYP50.0ARR21_ARATH; Putative two-component response regulator ARR21
TrEMBLR0GQL40.0R0GQL4_9BRAS; Uncharacterized protein
STRINGXP_006286281.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61131737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.10.0response regulator 21