PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10008638m
Common NameCARUB_v10008638mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Trihelix
Protein Properties Length: 600aa    MW: 65995 Da    PI: 9.4445
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10008638mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix97.51.2e-3062146187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+++e+laL+++r++m++++r++ lk+plWe+vs+k+ e g++rs+k+Ckek+en++k+yk++ke++++r++++   +++f+qlea
  Carubv10008638m  62 RWPREETLALLRIRSDMDSTFRDATLKAPLWEHVSRKLLELGYKRSAKKCKEKFENVQKYYKRTKETRGGRHDGK--AYKFFSQLEA 146
                      8*********************************************************************86555..5******985 PP
2trihelix104.57.8e-33445529186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      rW+k e+laLi++r+ me r++++  k+ lWee+s  m++ g++r++k+Ckekwen+nk+ykk+ke++kkr +++ +tcpyf++l+
  Carubv10008638m 445 RWPKAEILALINLRSGMEPRYQDNVPKGLLWEEISTSMKRMGYNRNAKRCKEKWENINKYYKKVKESNKKR-PQDAKTCPYFHRLD 529
                      8*********************************************************************8.99999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.86455119IPR017877Myb-like domain
SMARTSM007170.007659121IPR001005SANT/Myb domain
CDDcd122031.02E-2661126No hitNo description
PfamPF138379.1E-2161147No hitNo description
SMARTSM007170.011442504IPR001005SANT/Myb domain
PROSITE profilePS500906.667444502IPR017877Myb-like domain
CDDcd122038.59E-30444509No hitNo description
PfamPF138374.9E-22444529No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0010090Biological Processtrichome morphogenesis
GO:0030308Biological Processnegative regulation of cell growth
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0042631Biological Processcellular response to water deprivation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:2000038Biological Processregulation of stomatal complex development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MEQVGGGGGG NEVVEEASPI SSRPPASNNL EELMRFSAAA DDGGGGGGGG GGGSASSSSG  60
NRWPREETLA LLRIRSDMDS TFRDATLKAP LWEHVSRKLL ELGYKRSAKK CKEKFENVQK  120
YYKRTKETRG GRHDGKAYKF FSQLEALNTT PTPLQPHPHP PSSSLDVTPL SVANPILMPS  180
SSSSPFPIFS QPQPQTQPPQ THTVSFTPTP LPPPPPMAPT FPGVTFSSHS SSTASGMGSD  240
DDDDEDMDVD QTNIAGSSSR KRKRGNRGGG KMMELFEGLV RQVMQKQAAM QRSFLEALEK  300
REQERLDREE AWKRQEMSRL AREHEVMAQE RAASASRDAA IISLIQKITG HTIQLPPSLS  360
SQTPQIPPHQ PPQPPPAAKR AHQEPQLSTA QSQLQQPIMA IPQQQILPSP HLPHQPEQKQ  420
QQQQQQVQEM IVSSEQSSLL PSSSRWPKAE ILALINLRSG MEPRYQDNVP KGLLWEEIST  480
SMKRMGYNRN AKRCKEKWEN INKYYKKVKE SNKKRPQDAK TCPYFHRLDL LYRNKVLGGS  540
GGGGGSSTSG LPQEQKQSPV SAIKPPQEGV LNVQPHESGS SEEVEPIDQE STPQGTEKV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112KRSAKKCKE
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds specific DNA sequence such as GT3 box 5'-GGTAAA-3' in the SDD1 promoter. Negative regulator of water use efficiency (WUE) via the promotion of stomatal density and distribution by the transcription repression of SDD1. Regulates the expression of several cell cycle genes and endoreduplication, especially in trichomes where it prevents ploidy-dependent plant cell growth. {ECO:0000269|PubMed:19717615, ECO:0000269|PubMed:21169508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00177DAPTransfer from AT1G33240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10008638m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by water stress. {ECO:0000269|PubMed:21169508}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0210450.0AC021045.2 Arabidopsis thaliana chromosome I BAC T9L6 genomic sequence, complete sequence.
GenBankAC0270350.0AC027035.5 Arabidopsis thaliana chromosome 1 BAC T16O9 genomic sequence, complete sequence.
GenBankAJ0032150.0AJ003215.1 Arabidopsis thaliana GTL1 gene.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023645590.10.0trihelix transcription factor GTL1 isoform X1
SwissprotQ9C8820.0GTL1_ARATH; Trihelix transcription factor GTL1
TrEMBLR0IRM90.0R0IRM9_9BRAS; Uncharacterized protein
STRINGXP_006307050.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62262746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.11e-179GT-2-like 1
Publications ? help Back to Top
  1. Caro E,Desvoyes B,Gutierrez C
    GTL1 keeps cell growth and nuclear ploidy under control.
    EMBO J., 2012. 31(24): p. 4483-5
    [PMID:23188085]
  2. Zheng X, et al.
    The Wheat GT Factor TaGT2L1D Negatively Regulates Drought Tolerance and Plant Development.
    Sci Rep, 2016. 6: p. 27042
    [PMID:27245096]
  3. Shibata M, et al.
    GTL1 and DF1 regulate root hair growth through transcriptional repression of ROOT HAIR DEFECTIVE 6-LIKE 4 in Arabidopsis.
    Development, 2018.
    [PMID:29439132]