PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10008658m
Common NameCARUB_v10008658mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GRAS
Protein Properties Length: 593aa    MW: 66647.3 Da    PI: 4.8492
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10008658mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS438.26e-1342235923374
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      + L++cA+a+s+g+ e+a +++++l++++s +gdp qR+aay++e+Laar+a s++ +y+al+++e +   s+e+laa+++++ev+P++kf++l
  Carubv10008658m 223 QILISCARALSEGKSEEALSMVNELRQIVSIQGDPSQRIAAYMVEGLAARMAASGKFIYRALKCKEPP---SDERLAAMQVLFEVCPCFKFGFL 313
                      78*****************************************************************9...9********************** PP

             GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                      +aN aI ea++gee+vHiiDfdi+qG Q+++L++++a+ +++ p+lR+Tg+++pes+  s   l+ +g rL+++A+  gv+f+f++ + ++++ 
  Carubv10008658m 314 AANGAIIEAIKGEEEVHIIDFDINQGNQYMTLIRSIAELSGKRPRLRLTGIDDPESVqrSIGGLRIIGLRLEQLAKDHGVSFKFKA-LPSKTSI 406
                      *******************************************************9988899************************.599**** PP

             GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                      +++++L +kpgE+l+Vn+++qlh+++desv++ ++rde+L++vksl+Pk+v+vveq++++n+++F  rf+ea eyysa+f+sl+++lpres+er
  Carubv10008658m 407 VSPSTLGCKPGETLIVNFAFQLHHMPDESVTTVNQRDELLHMVKSLNPKLVTVVEQDVNTNTSPFYSRFIEAYEYYSAVFESLDMTLPRESQER 500
                      ********************************************************************************************** PP

             GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      ++vEr++l+r+ivn+vaceg+er+er e ++kWr+r+++aGF+p p+s ++ ++ + l+++ + + y+++ee g+l ++W++++L+++SaWr
  Carubv10008658m 501 MNVERQCLARDIVNIVACEGEERIERYEAAGKWRARMTMAGFNPKPMSARVINNLQNLIKQQYCNKYKLKEEMGELHFCWEEKSLIVASAWR 592
                      ***************************************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.277195572IPR005202Transcription factor GRAS
PfamPF035142.1E-131223592IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MVEQTLVREQ IRARIMSLVR SAEPSSYRNP KLYSLNDNGN NIGVTSAQIF DQDRSKNPCL  60
TDDSYPSQSY EKYFIDSPTD EFVQHPVGSG TSVSSFGSLD SFPSQSRPVL GCSMEFQLPF  120
DSTSTSSTRL LGDYQAVSYS PGMDVVEEFD EQMRSKIQEL ERALLGDEDD KMIGIDNLME  180
IDNEWSYQNE SEQHQDSPKE SSSADSNSHV SSKEVVSQTT PKQILISCAR ALSEGKSEEA  240
LSMVNELRQI VSIQGDPSQR IAAYMVEGLA ARMAASGKFI YRALKCKEPP SDERLAAMQV  300
LFEVCPCFKF GFLAANGAII EAIKGEEEVH IIDFDINQGN QYMTLIRSIA ELSGKRPRLR  360
LTGIDDPESV QRSIGGLRII GLRLEQLAKD HGVSFKFKAL PSKTSIVSPS TLGCKPGETL  420
IVNFAFQLHH MPDESVTTVN QRDELLHMVK SLNPKLVTVV EQDVNTNTSP FYSRFIEAYE  480
YYSAVFESLD MTLPRESQER MNVERQCLAR DIVNIVACEG EERIERYEAA GKWRARMTMA  540
GFNPKPMSAR VINNLQNLIK QQYCNKYKLK EEMGELHFCW EEKSLIVASA WR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-572235926375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10008658m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0154470.0AC015447.8 Arabidopsis thaliana chromosome I BAC F24J8 genomic sequence, complete sequence.
GenBankAY0458330.0AY045833.1 Arabidopsis thaliana putative scarecrow 1 protein (At1g21450) mRNA, complete cds.
GenBankAY0844920.0AY084492.1 Arabidopsis thaliana clone 109490 mRNA, complete sequence.
GenBankAY0966260.0AY096626.1 Arabidopsis thaliana unknown protein (At1g21450) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006307071.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLR0IBZ20.0R0IBZ2_9BRAS; Uncharacterized protein
STRINGXP_006307071.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69532744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]