PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10008886m
Common NameCARUB_v10008706mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 512aa    MW: 57471.9 Da    PI: 4.6663
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10008886mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM92.66.4e-2937852128
              NAM  52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      k+++++w+fF++r++ky++  r++r t +gyWkatgkd+ +   +++ vglkktLvfy+grap+ge+tdWvmhey++
  Carubv10008886m   3 KTGDRQWFFFTPRNRKYPNAARSSRGTVTGYWKATGKDRVIEY-NSRSVGLKKTLVFYRGRAPNGERTDWVMHEYTM 78 
                      56899************************************99.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100536.0171101IPR003441NAC domain
SuperFamilySSF1019411.83E-323101IPR003441NAC domain
PfamPF023655.6E-13977IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900057Biological Processpositive regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MLKTGDRQWF FFTPRNRKYP NAARSSRGTV TGYWKATGKD RVIEYNSRSV GLKKTLVFYR  60
GRAPNGERTD WVMHEYTMDE EELGRCKNAK EYFALYKLYK KSGAGPKNGE QYGAPFQEEE  120
WVDSDNEEAD NVAVPDNPVV HYENTRRMDD TKFCNPISVR LEDIEKLLNE IPDAPEVTTR  180
QFNEFSGVPQ GNSVEEIQST LLNGSSGEFI DPRKTGVFLP NAQPYNRNSS FQSRLKSANS  240
FEATSGMTPL LDFEKEDYIE MDDLLIPELG ASSTEKSGQF LNNGELGDIN EFDQLFHDIS  300
MSLDVDPVFQ GTSTDMSSLS NFANNTSDQK QQFLYPQLDQ TLEYQQNNFM HPSTTLNQFT  360
DNMWFQDGQA ALYDQQPQSS SGVFTSHSAG VMPLESMNPT MSVNAQNTEG QNGGKTTSQF  420
SSALWELLES IPSTPASACE GPLNQTFVRM SSFSRIRFNG TTSVTSRKVT VAKKRISNRG  480
FLLLSIMGAL CAIFWMFIAT VGVMERPVVL S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-26510769171NO APICAL MERISTEM PROTEIN
1ut4_B3e-26510769171NO APICAL MERISTEM PROTEIN
1ut7_A3e-26510769171NO APICAL MERISTEM PROTEIN
1ut7_B3e-26510769171NO APICAL MERISTEM PROTEIN
3swm_A3e-26510772174NAC domain-containing protein 19
3swm_B3e-26510772174NAC domain-containing protein 19
3swm_C3e-26510772174NAC domain-containing protein 19
3swm_D3e-26510772174NAC domain-containing protein 19
3swp_A3e-26510772174NAC domain-containing protein 19
3swp_B3e-26510772174NAC domain-containing protein 19
3swp_C3e-26510772174NAC domain-containing protein 19
3swp_D3e-26510772174NAC domain-containing protein 19
4dul_A3e-26510769171NAC domain-containing protein 19
4dul_B3e-26510769171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcriptional activator that promotes leaf senescence by up-regulating senescence-associated genes in response to developmental and stress-induced senescence signals. Functions in salt and oxidative stress-responsive signaling pathways. Binds to the promoter of NAC029/NAP and NAC059/ORS1 genes (PubMed:23926065). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:23926065}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00178DAPTransfer from AT1G34180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10008886m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, salt, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006307120.10.0NAC domain-containing protein 16
SwissprotA4FVP60.0NAC16_ARATH; NAC domain-containing protein 16
TrEMBLR0GVS70.0R0GVS7_9BRAS; Uncharacterized protein
STRINGXP_006307120.10.0(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34180.10.0NAC domain containing protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC
    Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription.
    Plant Cell Rep., 2016. 35(1): p. 155-66
    [PMID:26441053]