PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10008952m
Common NameCARUB_v10008952mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 496aa    MW: 55112.2 Da    PI: 4.5258
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10008952mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.84.6e-35501422103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d+++++++sw +++nsf+v+d+  fa+++Lpk Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll+
  Carubv10008952m  50 FLSKTYDMVDDPSTDSIVSWGADNNSFIVWDPPLFARDLLPKNFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLK 134
                      9****************************************************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +i r+k +
  Carubv10008952m 135 SITRRKPA 142
                      ****9965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.7E-3843134IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.89E-3646139IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-6146139IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.4E-195073IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.9E-3150139IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.4E-1988100IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434089113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.4E-19101113IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MDGGVRSKVS TSDGGGGGGG GSVTVESMEI KPSPQPQPAA ILSSNAPPPF LSKTYDMVDD  60
PSTDSIVSWG ADNNSFIVWD PPLFARDLLP KNFKHNNFSS FVRQLNTYGF RKVDPDRWEF  120
ANEGFLRGQK HLLKSITRRK PAQGHGQGHQ QSQHSNGQNA SVSACVEVGK FGLEEEVERL  180
KRDKNVLMQE LVRLRQQQQS TDNQLQTMVQ RLQGMENRQQ QLMSFLAKAV QSPHFLSQFL  240
QQQNQQNESS RRISDTNKKR RFKRDGIVGN NASASPDGQI VKYQPPMHEQ AKAMFKQLMK  300
MEPYKTGDDG FLLGNGTSTT EGTEMETSLN HTSGITLQEM PTASEIQTPS PMGTTPINVS  360
ASPEATENCI PSPDGLILPE FTHMLPEINA EKLPEDLMEP NMGDSSPFFD PDLSIDDLNF  420
DIDDFSMDPD IEPVDYTLLE DLLSSTVSDN MDFTPVDNET EQKQNGWDKT EHMDNLTQQM  480
GLLSPETIDP SRQNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-253813918129Heat shock factor protein 1
5d5v_B6e-253813918129Heat shock factor protein 1
5d5v_D6e-253813918129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256263NKKRRFKR
2257262KKRRFK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10008952m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0841100.0AC084110.4 Arabidopsis thaliana chromosome 1 BAC F27G20 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF5D140.0AC007767.3 Sequence of BAC F5D14 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006307334.10.0heat stress transcription factor A-1d
SwissprotQ9LQM70.0HFA1D_ARATH; Heat stress transcription factor A-1d
TrEMBLR0GW980.0R0GW98_9BRAS; Uncharacterized protein
STRINGXP_006307334.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64702440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.10.0heat shock transcription factor A1D
Publications ? help Back to Top
  1. Higashi Y, et al.
    HsfA1d, a protein identified via FOX hunting using Thellungiella salsuginea cDNAs improves heat tolerance by regulating heat-stress-responsive gene expression.
    Mol Plant, 2013. 6(2): p. 411-22
    [PMID:23393165]
  2. Jung HS, et al.
    Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14474-9
    [PMID:23918368]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Ohama N, et al.
    The Transcriptional Cascade in the Heat Stress Response of Arabidopsis Is Strictly Regulated at the Level of Transcription Factor Expression.
    Plant Cell, 2016. 28(1): p. 181-201
    [PMID:26715648]