PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10008977m

Common Name

CARUB_v10008977mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

WRKY

Protein Properties

Length: 488aa MW: 53322.8 Da PI: 7.7046

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10008977m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.2	9.5e-30	187	246	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r++ed ++++ tYeg+Hnh+ Carubv10008977m 187 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIAaSCPVRKQVQRCSEDMSILISTYEGTHNHP 246 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.1E-31	172	248	IPR003657	WRKY domain
SuperFamily	SSF118290	1.09E-26	180	248	IPR003657	WRKY domain
PROSITE profile	PS50811	28.529	182	248	IPR003657	WRKY domain
SMART	SM00774	1.1E-34	187	247	IPR003657	WRKY domain
Pfam	PF03106	5.5E-26	188	246	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MEEAKEENRR LKSSLSKIKK DFDILQTQYN QLMVQHEEPK HISSKGHHQD KDKVSEREEL 60 VSLSLGRGLK SLFQPSGSMK NKEEKNKDIM EEAGDDKKID GHEKGSEQGL SVAFEYKDLS 120 NPNEKFDHKK ETISLEIGSN NKTPSENSFG FKNDEDDHQE DQEELLPQNL VKKTRVSVRS 180 RCETPTMNDG CQWRKYGQKI AKGNPCPRAY YRCTIAASCP VRKQVQRCSE DMSILISTYE 240 GTHNHPLPMS ATAMASATSA AASMLLSGTS SSSSSSVAAS DLHGLNFSLS GNNINPKSNS 300 PFLQTSSSPS SSGHPTITLD LTASSSSQQP FLSMLNRFSS PTSNVSRSNS YPSTNLNFSN 360 NTNTLQNWSG GGGILSNQYR APYGNISTHQ QSPYQSIIQT RTVGSSFDPF GRSASSSSSH 420 PTQSNHDHIG IKNITTHQVP SLPAETIKAI TTDPNFQSAL ATALSSIIGG DLKIDHKVNR 480 SDAEKSP*

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MEEAKEENRR LKSSLSKIKK DFDILQTQYN QLMVQHEEPK HISSKGHHQD KDKVSEREEL  60
VSLSLGRGLK SLFQPSGSMK NKEEKNKDIM EEAGDDKKID GHEKGSEQGL SVAFEYKDLS  120
NPNEKFDHKK ETISLEIGSN NKTPSENSFG FKNDEDDHQE DQEELLPQNL VKKTRVSVRS  180
RCETPTMNDG CQWRKYGQKI AKGNPCPRAY YRCTIAASCP VRKQVQRCSE DMSILISTYE  240
GTHNHPLPMS ATAMASATSA AASMLLSGTS SSSSSSVAAS DLHGLNFSLS GNNINPKSNS  300
PFLQTSSSPS SSGHPTITLD LTASSSSQQP FLSMLNRFSS PTSNVSRSNS YPSTNLNFSN  360
NTNTLQNWSG GGGILSNQYR APYGNISTHQ QSPYQSIIQT RTVGSSFDPF GRSASSSSSH  420
PTQSNHDHIG IKNITTHQVP SLPAETIKAI TTDPNFQSAL ATALSSIIGG DLKIDHKVNR  480
SDAEKSP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-19	174	248	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10008977m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006307358.2	0.0	probable WRKY transcription factor 61
Swissprot	Q8VWV6	0.0	WRK61_ARATH; Probable WRKY transcription factor 61
TrEMBL	R0GWQ9	0.0	R0GWQ9_9BRAS; Uncharacterized protein
STRING	XP_006307358.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12663	17	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18860.1	0.0	WRKY DNA-binding protein 61

Link Out ? help Back to Top
Phytozome	Carubv10008977m
Entrez Gene	17900324

Publications ? help Back to Top
Gao R,Liu P,Yong Y,Wong SM Genome-wide transcriptomic analysis reveals correlation between higher WRKY61 expression and reduced symptom severity in Turnip crinkle virus infected Arabidopsis thaliana. Sci Rep, 2016. 6: p. 24604 [PMID:27086702]