PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10009102m

Common Name

CARUB_v10009095mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bHLH

Protein Properties

Length: 454aa MW: 49706.1 Da PI: 6.7305

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10009102m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.1	8.5e-05	334	372	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq Carubv10009102m 334 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 372 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.827	322	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.59E-5	332	376	No hit	No description
SuperFamily	SSF47459	7.07E-11	332	385	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-8	336	379	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MDSANLHQLQ DQLQLVGSSS SSSSLDNNSD PSCYGASSAH QWSPGGISFV SLSHNYNNEM 60 LNTRDHSSNN NTSECMSLST IHNHSLIQQQ DFPLQWPPYH HDQSSYHHHE GLLKIKEELS 120 SSTISDQQEG ISKFTDMLNS PVITNYLKIN EHKDYTEKLL LKTISPGFPT NGDYCSSLPS 180 SSSSSSPSSR RGNFSQIYPS VNISSLSESR KMSVDMSNNI PRPFDMNMQV FDGRLFEGNV 240 LVPPLNSQEI SNLGMSRGSF TPFGLPFHHH LQQTLHHPSS SSPSTHQMEM LSNIEPQTSE 300 GKRHNFLMAT KSGENASKKP RVESRSSCPP FKVRKEKLGD RIAALQQLVS PFGKTDTASV 360 LMEAIGYIKF LQSQIETLSV PYMRASRNRP GKASQLGSQP QEGDEEETRD LRSRGLCLVP 420 LSCMSYVTGD GGEGGGGVGS GFWPTPPGFG GGT*

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MDSANLHQLQ DQLQLVGSSS SSSSLDNNSD PSCYGASSAH QWSPGGISFV SLSHNYNNEM  60
LNTRDHSSNN NTSECMSLST IHNHSLIQQQ DFPLQWPPYH HDQSSYHHHE GLLKIKEELS  120
SSTISDQQEG ISKFTDMLNS PVITNYLKIN EHKDYTEKLL LKTISPGFPT NGDYCSSLPS  180
SSSSSSPSSR RGNFSQIYPS VNISSLSESR KMSVDMSNNI PRPFDMNMQV FDGRLFEGNV  240
LVPPLNSQEI SNLGMSRGSF TPFGLPFHHH LQQTLHHPSS SSPSTHQMEM LSNIEPQTSE  300
GKRHNFLMAT KSGENASKKP RVESRSSCPP FKVRKEKLGD RIAALQQLVS PFGKTDTASV  360
LMEAIGYIKF LQSQIETLSV PYMRASRNRP GKASQLGSQP QEGDEEETRD LRSRGLCLVP  420
LSCMSYVTGD GGEGGGGVGS GFWPTPPGFG GGT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10009102m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC012375	0.0	AC012375.3 Genomic sequence for Arabidopsis thaliana BAC T22C5 from chromosome I, complete sequence.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023645886.1	0.0	transcription factor bHLH110 isoform X2
Swissprot	Q9SFZ3	0.0	BH110_ARATH; Transcription factor bHLH110
TrEMBL	R0GX27	0.0	R0GX27_9BRAS; Uncharacterized protein
STRING	XP_006307469.1	0.0	(Capsella rubella)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	0.0	bHLH family protein

Link Out ? help Back to Top
Phytozome	Carubv10009102m
Entrez Gene	17900915

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]