PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10009399m

Common Name

CARUB_v10009399mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bZIP

Protein Properties

Length: 390aa MW: 42499.1 Da PI: 9.743

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10009399m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	45.8	1.3e-14	310	367	5	61
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke.vaklks 61 +r++r++kNRe+A rsR+RK+a++ eLe ++++L++ N++L+k+ e+ k+ ++lk Carubv10009399m 310 RRQKRMIKNRESAARSRARKQAYTLELEAEIESLKQLNQDLQKKQTEIMKTqNSELKE 367 79***************************************99887776651455554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.5E-13	306	371	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.461	308	359	IPR004827	Basic-leucine zipper domain
CDD	cd14707	8.41E-23	310	361	No hit	No description
Gene3D	G3DSA:1.20.5.170	8.1E-14	310	369	No hit	No description
Pfam	PF00170	1.5E-12	310	368	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.88E-10	310	359	No hit	No description
PROSITE pattern	PS00036	0	313	328	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009737	Biological Process	response to abscisic acid
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MGTHINFDNL GGDSSGGNGC NTNQSKPLAR QSSLYSLTFD ELQSTLGEPG KDFGSMNMDE 60 LLKNIWSAEE TQAFMTTPSS VAASGPSGYV PGGNGLQRQG SLTLPRTLSQ KTVDEVWKHL 120 NSKDGDNGNN RTDLPERQQT LGEMTLEDFL LRAGVVKEDN NSTQQKDNSS GFYANNGAAG 180 LGFGFGQLNQ NSISFNSNNS SMHLNQAPGL GLEVGGTMQQ PHQRQQQQPH QRLRPTIFPK 240 QANVTFAPVN MVNRGLDGPV NSNIGGGGVT VAATSPGTSS AENNTWSSPV PYVFGRGRRS 300 NTGLEKVVER RQKRMIKNRE SAARSRARKQ AYTLELEAEI ESLKQLNQDL QKKQTEIMKT 360 QNSELKESVK QPPWLAKTQC LRRTLTGPW*

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MGTHINFDNL GGDSSGGNGC NTNQSKPLAR QSSLYSLTFD ELQSTLGEPG KDFGSMNMDE  60
LLKNIWSAEE TQAFMTTPSS VAASGPSGYV PGGNGLQRQG SLTLPRTLSQ KTVDEVWKHL  120
NSKDGDNGNN RTDLPERQQT LGEMTLEDFL LRAGVVKEDN NSTQQKDNSS GFYANNGAAG  180
LGFGFGQLNQ NSISFNSNNS SMHLNQAPGL GLEVGGTMQQ PHQRQQQQPH QRLRPTIFPK  240
QANVTFAPVN MVNRGLDGPV NSNIGGGGVT VAATSPGTSS AENNTWSSPV PYVFGRGRRS  300
NTGLEKVVER RQKRMIKNRE SAARSRARKQ AYTLELEAEI ESLKQLNQDL QKKQTEIMKT  360
QNSELKESVK QPPWLAKTQC LRRTLTGPW*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the ABA-responsive element (ABRE). Could participate in abscisic acid-regulated gene expression.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00087	SELEX	Transfer from AT1G49720	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10009399m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by abscisic acid (ABA) and cold. {ECO:0000269\|PubMed:10636868}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF093544	0.0	AF093544.1 Arabidopsis thaliana clone 1 abscisic acid responsive elements-binding factor (ABRE) mRNA, complete cds.
GenBank	AK226983	0.0	AK226983.1 Arabidopsis thaliana mRNA for abscisic acid responsive elements-binding factor, complete cds, clone: RAFL09-41-C22.
GenBank	BT008575	0.0	BT008575.1 Arabidopsis thaliana clone U19471 putative abscisic acid responsive elements-binding factor (At1g49720) mRNA, complete cds.
GenBank	BT008647	0.0	BT008647.1 Arabidopsis thaliana clone RAFL09-77-C02 (R19471) putative abscisic acid responsive elements-binding factor (At1g49720) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006305034.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 4 isoform X1
Swissprot	Q9M7Q5	0.0	AI5L4_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 4
TrEMBL	R0GPT8	0.0	R0GPT8_9BRAS; Uncharacterized protein
STRING	XP_006305034.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM734	27	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49720.1	0.0	abscisic acid responsive element-binding factor 1

Link Out ? help Back to Top
Phytozome	Carubv10009399m
Entrez Gene	17900836

Publications ? help Back to Top
Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions. Plant Mol. Biol., 2018. 97(1-2): p. 149-163 [PMID:29680877]