PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10009522m
Common NameCARUB_v10009522mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 364aa    MW: 41137.1 Da    PI: 7.9125
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10009522mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.28.7e-36491412103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d+++++++sw ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fk+g+k+ll+
  Carubv10009522m  49 FLTKTYQLVDDPATDHVVSWGDDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKRGEKHLLC 133
                      9*****************************************************************99.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +i+r+k++
  Carubv10009522m 134 EIHRRKTS 141
                      *****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.6E-3841133IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.1E-6145138IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.25E-3546138IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-194972IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.8E-3249138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-198799IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434088112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-19100112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
LSSLSLSLSL ENSLMAMMVE NSYGGYGGGG GERIQLMVEG QGKAVPAPFL TKTYQLVDDP  60
ATDHVVSWGD DDTTFVVWRP PEFARDLLPN YFKHNNFSSF VRQLNTYGFR KIVPDRWEFA  120
NEFFKRGEKH LLCEIHRRKT SQMIPQQHSP FMSHHHGHHA PPQVPFSGGS FFPLPPRVTT  180
PEEDHYWCDD SPPSRPRVIP QHNNIDTTAA QVTALSEDNE RLRRSNTVLM SELAHMKKLY  240
NDIIYFVQNH VKPVAPSNSY LSSFLQKQQP PTLDYYNTAT TVNATTNNNL NHGLNSSPPT  300
SQSSITVLED DTNNHDQRNM RKTKLFGVSL PSSKKRSHHF SDQSSKTRLV LDKSDLALNL  360
MTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-224514117123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1333337KKRSH
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10009522m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934990.0AB493499.1 Arabidopsis thaliana At1g46264 mRNA for hypothetical protein, partial cds, clone: RAAt1g46264.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305155.20.0heat stress transcription factor B-4
SwissprotQ9C6350.0HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLR0ILZ30.0R0ILZ3_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006305155.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29002866
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.10.0heat shock transcription factor B4