PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10009524m
Common NameCARUB_v10009524mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 364aa    MW: 41014.4 Da    PI: 10.0193
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10009524mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.71.8e-52541831128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeelv +yLk+k+++ +l++ ++i++vd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+v+s
  Carubv10009524m  54 LPPGFRFHPTDEELVIHYLKRKADSVPLPV-SIIADVDLYKFDPWELPAKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVIS 146
                      79****************************.89***************999999**************************************** PP

              NAM  95 k...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +    +++vg+kk Lvfy+g+ pkg+k+dW+mheyrl
  Carubv10009524m 147 TgggVNKKVGVKKALVFYSGKPPKGVKSDWIMHEYRL 183
                      97665667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-6450214IPR003441NAC domain
PROSITE profilePS5100561.61954214IPR003441NAC domain
PfamPF023651.7E-2755183IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0045995Biological Processregulation of embryonic development
GO:0048317Biological Processseed morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
KNKITKRLLS HPFLIFFSRR PKKKKKSRIS PIINLMESTD SSGGGLPPPP QPNLPPGFRF  60
HPTDEELVIH YLKRKADSVP LPVSIIADVD LYKFDPWELP AKASFGEQEW YFFSPRDRKY  120
PNGARPNRAA TSGYWKATGT DKPVISTGGG VNKKVGVKKA LVFYSGKPPK GVKSDWIMHE  180
YRLTDNKPNH ICDFGNKKNS LRLDDWVLCR IYKKNNSTTT SRHHHHHNHY YLDHNDKDHR  240
YDMMMIDDDR FRHVPPSLHF PAIFSDNNDP TAIYDGGGGG NYSMNHNNFA SGSKQEQLFP  300
PVMMMTSLNQ DSGIGPSTSS SPSKRFNGGD CSNIVSSMAA TTTPLMQNQG GIYQLPGLMN  360
WYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-735321714171Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12026PKKKKKS
Functional Description ? help Back to Top
Source Description
UniProtMay encode a transcription factor involved in the elaboration of shoot apical meristems (SAM) (Probable). Together with NAC056/NARS1, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00201DAPTransfer from AT1G52880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10009524m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305156.20.0NAC domain-containing protein 18
SwissprotQ9ZNU21e-160NAC18_ARATH; NAC domain-containing protein 18
TrEMBLR0I6X80.0R0I6X8_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006305156.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19028276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52880.11e-160NAC family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wang YX
    Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress.
    Mol. Biol. Rep., 2013. 40(11): p. 6451-8
    [PMID:24057250]
  3. Raherison ES,Giguère I,Caron S,Lamara M,MacKay JJ
    Modular organization of the white spruce (Picea glauca) transcriptome reveals functional organization and evolutionary signatures.
    New Phytol., 2015. 207(1): p. 172-87
    [PMID:25728802]
  4. Du Q,Wang H
    The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation.
    Plant Signal Behav, 2015. 10(10): p. e1078955
    [PMID:26340415]
  5. Vialette-Guiraud AC, et al.
    A Conserved Role for the NAM/miR164 Developmental Module Reveals a Common Mechanism Underlying Carpel Margin Fusion in Monocarpous and Syncarpous Eurosids.
    Front Plant Sci, 2015. 6: p. 1239
    [PMID:26793217]