PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10009639m
Common NameCARUB_v10009639mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 343aa    MW: 38653.9 Da    PI: 6.7287
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10009639mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.15.3e-12201226126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      y   +C+++ +tG+C yGd+CkF H+
  Carubv10009639m 201 YQPDICKDYKETGYCGYGDSCKFLHD 226
                      67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.57E-9199232IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-8200227IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.009200228IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-13201231IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9201226IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.9E-13264318IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578502.15E-13276319No hitNo description
PfamPF139201.4E-8276318No hitNo description
CDDcd001622.67E-9277318No hitNo description
SMARTSM001849.2E-5277314IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.63277315IPR001841Zinc finger, RING-type
PROSITE patternPS005180292301IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MSDSGEAKPS QQEESQPQPA GQESQPQQVC TFFKKPTKAK NIRKRTLDAD EEDEDSKSQS  60
SILQNLKKVA KPDSKLYFSS GPSKSSTTTN EAPEKPVFHY DSSKEIQVQN DSKATATLET  120
ETDFNQDARA IRERVLKKAD ESLKGNKKKA SDEKLYTGIH GYTDHKAGFR REQTISSEKA  180
GGSHGPLRAS AHIRVSARFD YQPDICKDYK ETGYCGYGDS CKFLHDRGDY KPGWQIEKEW  240
EEAEKVRKRN KAMGVEDEDD EAGNDSDEDD DALPFACFIC REPFVDPVVT KCKHYFCEHC  300
ALKHHTKNKK CFVCNQPTMG IFNAAHEIKK RMAEERSKAE GL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M1e-66111341113326RING finger protein 113A
5z58_M1e-66111341113326RING finger protein 113A
6ff4_t1e-66111341113326RING finger protein 113A
6ff7_t1e-66111341113326RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10009639m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934190.0AB493419.1 Arabidopsis thaliana At1g01350 mRNA for hypothetical protein, partial cds, clone: RAAt1g01350.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305264.10.0zinc finger CCCH domain-containing protein 1
RefseqXP_023645143.10.0zinc finger CCCH domain-containing protein 1
SwissprotQ8GX840.0C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLR0GQF70.0R0GQF7_9BRAS; Uncharacterized protein
STRINGXP_006305264.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110992634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.10.0C3H family protein