PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10009763m
Common NameCARUB_v10009763mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 322aa    MW: 36298.6 Da    PI: 8.4473
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10009763mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.17.4e-12658148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48
                     +++WT+eE+e lv +++++G+g W+ I +        + Rt  ++k++w++ +
  Carubv10009763m  6 KNKWTPEEEEALVAGIAKYGPGKWSNIIEDPEfapqlLERTNINLKDKWRNMK 58
                     689************************99999999***************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.006162IPR017930Myb domain
SuperFamilySSF466899.33E-16360IPR009057Homeodomain-like
SMARTSM007172.9E-9560IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-15557IPR009057Homeodomain-like
PfamPF002497.9E-8658IPR001005SANT/Myb domain
CDDcd116602.46E-18858No hitNo description
PROSITE profilePS5150420.63691168IPR005818Linker histone H1/H5, domain H15
SMARTSM005269.6E-898163IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.103.1E-10100172IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005382.3E-6103161IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467854.41E-11103171IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MLGHRKNKWT PEEEEALVAG IAKYGPGKWS NIIEDPEFAP QLLERTNINL KDKWRNMKTR  60
VGSMEKSRTQ TIKSVSVSFT PAKTSPSNKS SPSSLSDMSN ATSYCPIIFE AISTINDESG  120
SDLKEILSFI EERQEVPKNF KKLLSNSLRL LVSQDKLKKV RNHYKISITK ATKPAHILHP  180
KDSTNPPELP STSVMSTKTK ETHDIDAAAN KVAEGFDVGY EERQDFRKFL SECLKILVSQ  240
GKLEKVLDRY KMSELEKKVL EAAPEVVAMK LAESDNKRLI AAEAVEEEQR MHKFVEESHT  300
MLQLSIEIHK QCALGEEVVL R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10009763m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305374.10.0telomere repeat-binding factor 5 isoform X2
TrEMBLR0GQR30.0R0GQR3_9BRAS; Uncharacterized protein
STRINGXP_006305374.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1668455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.29e-51MYB_related family protein