PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10009814m

Common Name

CARUB_v10009814mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

MYB_related

Protein Properties

Length: 313aa MW: 34994.4 Da PI: 4.7419

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10009814m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.8	4.5e-07	218	272	3	48
SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqkyl 48 WT+ E++ l +v+ + ++ Wk+I ++ k+R + ++k++w++ l Carubv10009814m 218 LWTAKEEDMLRVGVEIFSTKikknmPWKKILEMGKgvfhKTRNPSDLKDKWRNML 272 6****************************9888***************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.05	211	272	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.5E-8	213	278	IPR009057	Homeodomain-like
SMART	SM00717	6.0E-4	215	274	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.28E-9	215	274	IPR009057	Homeodomain-like
CDD	cd11660	3.60E-9	219	273	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
LGETEEIGSV NEKLIEICNA HCDGGDNDFN SAKNFFYYDR NFGNDEICRS FELSNELACI 60 VCDLLDGSVV PCSGNDCPFA IHRKCAELDC EDPASAYCPY CWLKYQATRS TAVAAAKART 120 SALVRNGDIA TTRENIQLEN GPDKSLPMQL HENIHQIRKV TDQLKALNFQ LDESVDQLND 180 TEKACGEASV VVNDQFIDIE TSRNEASVVV NDQPKRVLWT AKEEDMLRVG VEIFSTKIKK 240 NMPWKKILEM GKGVFHKTRN PSDLKDKWRN MLHMSMKKLG DFDDGLCLCN RSFGFLRIGD 300 QNGEGEKGGS DE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10009814m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023646000.1	0.0	uncharacterized protein LOC17896988
TrEMBL	R0IF72	0.0	R0IF72_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_006304037.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7660	13	27

Link Out ? help Back to Top
Phytozome	Carubv10009814m
Entrez Gene	17896988