PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10009890m
Common NameCARUB_v10009890mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 296aa    MW: 32617.4 Da    PI: 9.8121
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10009890mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.53.1e-13556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+e l+ +v ++G+g Wk I r  +      +R+  ++k++w+++
  Carubv10009890m  5 KLKWTAEEEEALLAGVGKHGPGKWKNILRDPQfadqlSNRSNIDLKDKWRNL 56
                     689***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.578162IPR017930Myb domain
SuperFamilySSF466891.15E-15359IPR009057Homeodomain-like
SMARTSM007177.3E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-14556IPR009057Homeodomain-like
PfamPF002494.0E-9556IPR001005SANT/Myb domain
CDDcd116601.38E-20756No hitNo description
SMARTSM005262.2E-18122188IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.58E-13123207IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.7E-10123196IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150420.365124199IPR005818Linker histone H1/H5, domain H15
PfamPF005386.4E-9126197IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGNQKLKWTA EEEEALLAGV GKHGPGKWKN ILRDPQFADQ LSNRSNIDLK DKWRNLSVAP  60
GIQGSKDKIR TPKIKAAAFH LATAAAAATL PPTVLPSPIV TLIRSVSSDL SIDESCNIVV  120
DAKNAPRYDG MIFEALSTLT DVNGSDVSAI FNFIEQQRHE VPLNFRRILS SRLRRLAAQG  180
KLEKVSHLKS TQNFYKMNDN SLVPRTPLVA RPKETNVKPR QTNSQGPSVS QEMVGEASIT  240
AAYKLVEVEN KLDVVKGSSE EIQRMVNLAK HAENMLAIAR EMHEECCQGK IMLLN*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10009890m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1185330.0AK118533.1 Arabidopsis thaliana At1g17520 mRNA for putative myb-related DNA-binding protein, complete cds, clone: RAFL19-76-F04.
GenBankAY5195380.0AY519538.1 Arabidopsis thaliana MYB transcription factor (At1g17520) mRNA, complete cds.
GenBankBT0052900.0BT005290.1 Arabidopsis thaliana At1g17520 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006304061.10.0telomere repeat-binding factor 4 isoform X1
SwissprotF4I7L11e-154TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLR0I3W90.0R0I3W9_9BRAS; Uncharacterized protein
STRINGXP_006304061.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-147MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]