PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10010057m
Common NameCARUB_v10010057mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family G2-like
Protein Properties Length: 259aa    MW: 29646 Da    PI: 7.1995
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10010057mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1023.8e-322477255
          G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     prlrWtpeLH++Fv+av+ LGG+ kAtPk +l++m+vkgLt++hvkSHLQ+YR 
  Carubv10010057m 24 PRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYRG 77
                     8****************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.4132080IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-292077IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-222476IPR006447Myb domain, plants
SuperFamilySSF466893.58E-152476IPR009057Homeodomain-like
PfamPF002498.0E-82576IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MGRCGRSSDG GMGGVRPYVR SPVPRLRWTP ELHRSFVHAV DLLGGQYKAT PKLVLKIMDV  60
KGLTISHVKS HLQMYRGSRL TLLGKPEESS SPSSRIRRRR QDNEEDHLHD NLSVHARNDC  120
LLGFHSFNFR EQTDNDDDDF LNIMNMERAK KTFAGYAESI KFQSHHFLEA ESRKTNWKNT  180
WREDEHEEEE EEEELSLSLS LNHPHDKQQR WKSNNAASSL SETSEAVSSS SAPFIFRDCF  240
ASSKIDLNLN LSFSLLRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-192579458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-192579458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-192579357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-192579357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-192579357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-192579357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-192579458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-192579458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-192579458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-192579458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-192579458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-192579458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10010057m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304860.0AJ630486.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At1g14600.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006303284.10.0putative Myb family transcription factor At1g14600 isoform X1
SwissprotQ700D91e-130MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLR0GJS60.0R0GJS6_9BRAS; Uncharacterized protein
STRINGXP_006303284.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46941852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.11e-117G2-like family protein