PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10010093m

Common Name

CARUB_v10010093mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

WOX

Protein Properties

Length: 252aa MW: 28483.9 Da PI: 10.1052

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10010093m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.1	4.7e-21	89	148	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ Carubv10010093m 89 TRWNPTQEQIGILEMLYKGgMRTPNAQQIEHITSQLgkygKIEGKNVFYWFQNHKARERQ 148 7***************99************************************97 PP
2	Wus_type_Homeobox	116.7	1e-37	89	150	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+lyk G+rtPn+++i++it++L +yGkie+kNVfyWFQN+kaRerqkq Carubv10010093m 89 TRWNPTQEQIGILEMLYKGGMRTPNAQQIEHITSQLGKYGKIEGKNVFYWFQNHKARERQKQ 150 8***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.025	84	149	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.44E-12	85	153	IPR009057	Homeodomain-like
SMART	SM00389	2.0E-7	86	153	IPR001356	Homeobox domain
CDD	cd00086	5.29E-5	89	150	No hit	No description
Pfam	PF00046	1.0E-18	89	148	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.3E-8	90	148	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001944	Biological Process	vasculature development
GO:0007165	Biological Process	signal transduction
GO:0010067	Biological Process	procambium histogenesis
GO:0051301	Biological Process	cell division
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MKVHEFSNGF SSSWDQHDST SSLSLSCKRL RPLAPKLSAG SPPSPPSSSS GVTSATFDLK 60 SFIRPDQTGP TKNEHKRDPP QLETHPGGTR WNPTQEQIGI LEMLYKGGMR TPNAQQIEHI 120 TSQLGKYGKI EGKNVFYWFQ NHKARERQKQ KRNNLISLSC QSSFTTTSVS NPSVTTKIRT 180 SSSLDIRRDS MVEKQELVEE NEYKRTCRSW GFENLEIEGR RNKNNSTMST TFHKIIDNVT 240 LELFPLHPEG R*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10010093m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493501	0.0	AB493501.1 Arabidopsis thaliana At1g46480 mRNA for hypothetical protein, partial cds, clone: RAAt1g46480.
GenBank	AY251396	0.0	AY251396.1 Arabidopsis thaliana WOX4 protein mRNA, complete cds.
GenBank	BT010692	0.0	BT010692.1 Arabidopsis thaliana At1g46480 mRNA, complete cds.
GenBank	BT010974	0.0	BT010974.1 Arabidopsis thaliana At1g46480 mRNA, complete cds.
GenBank	FJ440850	0.0	FJ440850.1 Arabidopsis thaliana WOX4 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006305551.1	0.0	WUSCHEL-related homeobox 4
Swissprot	Q6X7J9	1e-152	WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBL	R0I7Y8	0.0	R0I7Y8_9BRAS; Uncharacterized protein
STRING	XP_006305551.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5980	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	1e-125	WUSCHEL related homeobox 4

Link Out ? help Back to Top
Phytozome	Carubv10010093m
Entrez Gene	17898957

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Guo X, et al. Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLoS Pathog., 2017. 13(2): p. e1006142 [PMID:28158306] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytol., 2017. 215(2): p. 642-657 [PMID:28609015] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918]