PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10010134m
Common NameCARUB_v100101340mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 28114.7 Da    PI: 7.6343
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10010134mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.72.3e-311261251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  Carubv10010134m 12 RIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 61
                     8***********************************************96 PP
2K-box81.22.3e-27961651685
            K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                      s+qqe+ kLk++++ Lqr+qR+llGedL++Ls keL++Le+qL++slk+iR+ +++++l+q+++lq k  
  Carubv10010134m  96 SSQQEYLKLKERYDALQRTQRNLLGEDLGPLSSKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKLA 165
                      68****************************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR004042.0E-26525IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.49E-301079IPR002100Transcription factor, MADS-box
CDDcd002651.11E-401179No hitNo description
SMARTSM004324.2E-311162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.2021163IPR002100Transcription factor, MADS-box
PfamPF003192.3E-261259IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-262540IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-264061IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.2394199IPR002487Transcription factor, K-box
PfamPF014862.6E-2197163IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0048481Biological Processplant ovule development
GO:0048833Biological Processspecification of floral organ number
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MRASLVHNNW RRIENKINRQ VTFAKRRNGL LKKAYELSVL CDAEVALIIF SNRGKLYEFC  60
SSSSSMLRTL ERYQKCNYGA PEPNVPSREA LAVELSSQQE YLKLKERYDA LQRTQRNLLG  120
EDLGPLSSKE LESLERQLDS SLKQIRALRT QFMLDQLNDL QSKLADGYQM PLQLNPNPED  180
HVDHYARHHH QQQHQHSQAF FQPLECEPIL QIGYQGQQDH GMGAGPSVNN YMLGWLPYDT  240
NSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A4e-5378163186Developmental protein SEPALLATA 3
4ox0_B4e-5378163186Developmental protein SEPALLATA 3
4ox0_C4e-5378163186Developmental protein SEPALLATA 3
4ox0_D4e-5378163186Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor active in inflorescence development and floral organogenesis.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00605ChIP-seqTransfer from AT1G24260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10010134m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0155520.0AF015552.1 Arabidopsis thaliana MADS-box (AGL9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019099223.11e-155PREDICTED: developmental protein SEPALLATA 3 isoform X5
SwissprotO040671e-149AGL9_SINAL; Agamous-like MADS-box protein AGL9 homolog
TrEMBLR0IMY81e-171R0IMY8_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006305560.11e-172(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62202644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.31e-152MIKC_MADS family protein
Publications ? help Back to Top
  1. Bonhomme F,Sommer H,Bernier G,Jacqmard A
    Characterization of SaMADS D from Sinapis alba suggests a dual function of the gene: in inflorescence development and floral organogenesis.
    Plant Mol. Biol., 1997. 34(4): p. 573-82
    [PMID:9247539]