PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10010312m
Common NameCARUB_v10010312mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 206aa    MW: 22789 Da    PI: 6.9164
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10010312mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.000215274123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++C + F ++  L  H++ H
  Carubv10010312m 52 FSCNYCRRKFYSSQALGGHQNAH 74
                     89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.14E-64980No hitNo description
PROSITE profilePS5015711.3855279IPR007087Zinc finger, C2H2
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MTESDDASRE QARGGETSSN QESNPVSLDL KLNDSFTDDI KGAKSEANPR VFSCNYCRRK  60
FYSSQALGGH QNAHKRERTM AKRAMHMGRM FGHHHRPYTY TSSSLGMQAH SGLLHHTLSQ  120
PQPLVSRFHH QGYFGNSVPL FFDYDDGGSD FFWPGSFRQV VEEAEAPVMV AVTESGFDLN  180
SVAANGGVDN NNNNNSSKPD LTLRL*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10010312m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0001030.0AC000103.2 Genomic sequence for Arabidopsis thaliana BAC F21J9 from chromosome I, complete sequence.
GenBankAC0041330.0AC004133.3 Genomic sequence for Arabidopsis thaliana BAC F5A9 from chromosome I, complete sequence.
GenBankAK1190180.0AK119018.1 Arabidopsis thaliana At1g24630 mRNA for putative zinc finger protein ZFP7, complete cds, clone: RAFL21-34-I16.
GenBankATHZFPG0.0L39650.1 Arabidopsis thaliana zinc finger protein (ZFP7) mRNA, complete cds.
GenBankBT0056290.0BT005629.1 Arabidopsis thaliana clone U51263 putative zinc finger protein 7, ZFP7 (At1g24625) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305624.11e-154zinc finger protein 7
SwissprotQ392661e-132ZFP7_ARATH; Zinc finger protein 7
TrEMBLR0GRJ61e-152R0GRJ6_9BRAS; Uncharacterized protein
STRINGXP_006305624.11e-153(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139991725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24625.15e-87zinc finger protein 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]
  3. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]