PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10010349m

Common Name

CARUB_v10010349mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

WOX

Protein Properties

Length: 197aa MW: 22257.8 Da PI: 6.1583

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10010349m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.1	4.7e-21	77	137	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t++ql++Le+ +e+ + +p++++++e+A++l ++te++V++WFqNrRa+ k+ Carubv10010349m 77 RHRWTPTSTQLQILESIYEEgSGTPNRRRIREIATELsehgQITETNVYNWFQNRRARSKR 137 89***************99************************************97 PP
2	Wus_type_Homeobox	101.9	4.5e-33	76	139	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPt++Q++iLe++y++G tPn+++i++i++eL+e+G+i+++NV++WFQNr+aR+++kq Carubv10010349m 76 TRHRWTPTSTQLQILESIYEEGSGTPNRRRIREIATELSEHGQITETNVYNWFQNRRARSKRKQ 139 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.59E-19	69	144	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.6E-17	70	143	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.094	73	138	IPR001356	Homeobox domain
SMART	SM00389	8.2E-14	75	142	IPR001356	Homeobox domain
Pfam	PF00046	1.1E-18	77	137	IPR001356	Homeobox domain
CDD	cd00086	2.88E-14	77	139	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001944	Biological Process	vasculature development
GO:0010072	Biological Process	primary shoot apical meristem specification
GO:0051301	Biological Process	cell division
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MEREIQNEAY NGRVMTEEQM EILRKQIAVY AVICDQLVLL HNSLSSFHPF SSGMRPMVGG 60 YFDPMGSSSS SHRMSTRHRW TPTSTQLQIL ESIYEEGSGT PNRRRIREIA TELSEHGQIT 120 ETNVYNWFQN RRARSKRKQP QTTTTANGQA EDVAVSTEEM RSCGDSGGLE SYEHILFPSP 180 DLGIEHLLSI GKFLES*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	138	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10010349m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ441297	0.0	AJ441297.1 Arabidopsis thaliana mRNA for homeodomain protein PALE-2 (pale-2 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006305646.1	1e-145	WUSCHEL-related homeobox 14
Swissprot	Q9LM84	1e-135	WOX14_ARATH; WUSCHEL-related homeobox 14
TrEMBL	R0I890	1e-144	R0I890_9BRAS; Uncharacterized protein
STRING	XP_006305646.1	1e-145	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12211	17	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20700.1	1e-134	WUSCHEL related homeobox 14

Link Out ? help Back to Top
Phytozome	Carubv10010349m
Entrez Gene	17897557

Publications ? help Back to Top
Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997]