PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10010390m
Common NameCARUB_v10010390mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family LBD
Protein Properties Length: 187aa    MW: 20820.7 Da    PI: 5.2744
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10010390mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260138.62.1e-4330128199
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r da++s+vyeAear+rdPvyG++g i +lq+q+++l+a+l
  Carubv10010390m  30 PCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRADAVRSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQL 123
                      7********************************************************************************************* PP

           DUF260  95 allke 99 
                      a+++ 
  Carubv10010390m 124 AKAQV 128
                      *9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.13429130IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-4330127IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MERNGDASAA TAPIISSSSS PPPPRVVLSP CAACKILRRR CADKCVLAPY FPPTDPAKFT  60
IAHRVFGASN IIKFLQELPE SQRADAVRSM VYEAEARIRD PVYGCAGAIY HLQRQVSELQ  120
AQLAKAQVEM VNVQLQRSSL LELIYNMDQV QKQEQDNMSF ESNDLGFLED NSNTNSSMLW  180
WDPLWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-422913110112LOB family transfactor Ramosa2.1
5ly0_B2e-422913110112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10010390m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738410.0AB473841.1 Arabidopsis thaliana ASL8 mRNA for ASYMMETRIC LEAVES2-like 8 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305673.11e-137LOB domain-containing protein 1
SwissprotQ9LQR01e-115LBD1_ARATH; LOB domain-containing protein 1
TrEMBLR0GS201e-136R0GS20_9BRAS; Uncharacterized protein
STRINGXP_006305673.11e-137(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114128105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-116LOB domain-containing protein 1