PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10010705m
Common NameCARUB_v10010705mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 110aa    MW: 12557.2 Da    PI: 5.1918
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10010705mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.50.0001350831755
                     HHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
              HLH 17 NsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                     N++++ L++++P+    + +K     ++L k+++Y+++L+
  Carubv10010705m 50 NDKLNVLKSMVPTV---NETKsQ---SVLNKTIKYLHELE 83
                     9************7...677745...59*******99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-74896IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-84994IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MCCGRYLHDV PLMHSSDEKK MFQAETTGLN QCVSMEYDDD DPSHDKTKEN DKLNVLKSMV  60
PTVNETKSQS VLNKTIKYLH ELEARVEELE SQHGCVSRLR LTITMECSY*
Functional Description ? help Back to Top
Source Description
UniProtTrancsription activator, when associated with MYB75/PAP1 or MYB90/PAP2. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10010705m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010474787.17e-36PREDICTED: transcription factor MYC1-like
SwissprotQ8W2F13e-25BH012_ARATH; Transcription factor MYC1
TrEMBLR0I2703e-75R0I270_9BRAS; Uncharacterized protein
STRINGXP_006303446.15e-76(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00480.11e-27bHLH family protein