PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10010909m

Common Name

CARUB_v10010909mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

TCP

Protein Properties

Length: 169aa MW: 18328.4 Da PI: 11.0559

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10010909m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	26.3	2.4e-08	42	70	2	30
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaa 30 ++ k++++++h kv+gR+RR R+sa caa Carubv10010909m 42 TPTKRPSKDRHIKVDGRGRRLRISAICAA 70 6789************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.3E-4	48	70	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MESHKNNNKK NHHQTTGLTH LVPFIRPIST PNSTTTVSTT TTPTKRPSKD RHIKVDGRGR 60 RLRISAICAA PTTQTIPANI STLNVSLRSS GRRASQNAAV FGFQQQLYNP KPFREEEPNS 120 LDQEPGSSSP KPGSEALNQE PGLTQSRTQN MIHTTYVGSG GSNVSLDK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10010909m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023632857.1	3e-78	LOW QUALITY PROTEIN: transcription factor TCP23
Swissprot	Q9LQF0	1e-44	TCP23_ARATH; Transcription factor TCP23
TrEMBL	R0IG14	1e-119	R0IG14_9BRAS; Uncharacterized protein
STRING	XP_006304392.1	1e-120	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7053	24	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35560.1	7e-33	TCP family protein

Link Out ? help Back to Top
Phytozome	Carubv10010909m
Entrez Gene	17899765