PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10010918m
Common NameCARUB_v10010918mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family AP2
Protein Properties Length: 338aa    MW: 38419.6 Da    PI: 6.2605
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10010918mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.17.7e-1256112155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s ++GV++++++gr++A+++d  s+n  ++k+ + g ++ ++ Aa+a++ a++k++g
  Carubv10010918m  56 SVHRGVTRHRWTGRYEAHLWDkNSWNDtQTKKGRQGAYDEEDAAARAYDLAALKYWG 112
                      689******************88888888888888*****99*************98 PP
2AP251.13.4e-16155206155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV  ++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Carubv10010918m 155 SKYRGVAKHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDIAAIEYRG 206
                      89****************99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.04E-1456121IPR016177DNA-binding domain
SMARTSM003807.5E-1857126IPR001471AP2/ERF domain
PfamPF008473.7E-857112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-1157120IPR001471AP2/ERF domain
PROSITE profilePS5103218.42657120IPR001471AP2/ERF domain
PRINTSPR003673.0E-55869IPR001471AP2/ERF domain
PfamPF008473.7E-11155206IPR001471AP2/ERF domain
CDDcd000182.7E-14155216No hitNo description
SuperFamilySSF541712.09E-17155216IPR016177DNA-binding domain
PROSITE profilePS5103217.859156214IPR001471AP2/ERF domain
SMARTSM003801.4E-25156220IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-17156214IPR001471AP2/ERF domain
PRINTSPR003673.0E-5196216IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MYIAVEVTPV MEEITRRSKK TLVENETGDE TAGQVVIKAK RKRRSQPREA PPQRSSVHRG  60
VTRHRWTGRY EAHLWDKNSW NDTQTKKGRQ GAYDEEDAAA RAYDLAALKY WGRDTILNFP  120
LCNYEEDMKE MESQSKEEYI GSLRRKSSGF SRGVSKYRGV AKHHHNGRWE ARIGRVFGNK  180
YLYLGTYATQ EEAAIAYDIA AIEYRGLNAV TNFDISRYLK LPAPENLTDS AKHPLEIPRS  240
DLSPNHESEL SQSQSSSDDN DDRKTKLLKS SPLNAEELVG PSTPPEIAPP RRSFPEDIQT  300
YFGCQNSGKL TTEEDDVIFG DLDSFLTPDF YSELHDC*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10010918m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0459150.0AY045915.1 Arabidopsis thaliana unknown protein (At1g16060) mRNA, complete cds.
GenBankAY1338800.0AY133880.1 Arabidopsis thaliana clone U10081 unknown protein (At1g16060) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023645597.10.0AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
SwissprotQ94AN40.0AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLR0GSI40.0R0GSI4_9BRAS; Uncharacterized protein
STRINGXP_006305848.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.10.0ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]