PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10010943m
Common NameCARUB_v10010943mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GRAS
Protein Properties Length: 703aa    MW: 79720.6 Da    PI: 5.9817
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10010943mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3442.4e-1053236992373
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfs 94 
                      ++lL+ cA+ vs+gd+  a+ lL ++++++sp gd+ qR+a++f++AL+arl++s+ ++ ++   + ++++++ ++ l+++++f  +sP++++ 
  Carubv10010943m 323 RTLLTLCAQSVSAGDKITADDLLRQIRKQSSPLGDASQRVAHFFANALEARLQGSSGTMIQSYyDSITSKKRTAAQILKSYEVFLSASPFMTLI 416
                      6799**************************************************5555555553777777788********************* PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      ++  N++Il+a++g++ +HiiDf+i +G+QWp ++q L + + g  +lRiTg++ p++g   +e+++ tg+rL+++++++g+pfe+n++++k++
  Carubv10010943m 417 YFFSNKMILDAAKGASVLHIIDFGILYGFQWPMFIQHLGKSKIGLRKLRITGIELPQHGfrPTERIQDTGRRLTEYCKRFGIPFEYNAIASKNW 510
                      **********************************************************9******************************99*** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                      e++++ee++++p+E+laVn vl+ ++l d +   e+ +rd +Lkl+++++P+v+  +  + + n++ F +rf eal +ysalfd + a l+re+
  Carubv10010943m 511 ETIRIEEFKIRPNEVLAVNTVLRFKNLRDVTPGEEDcPRDGFLKLIRDMNPNVFLSSTINGSFNAPFFTTRFKEALFHYSALFDLFGAALSREN 604
                      ****************************9999999889******************************************************** PP

             GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372
                       eri  E e+ gre++nv+aceg +r+er et+++W+ r+ +aGFk+ p++ + +++ +  ++k +  + + ++e+s+++++gWk+r L+s S+
  Carubv10010943m 605 PERIHFEGEFYGREVMNVIACEGVDRVERPETYKQWQVRMVRAGFKQKPVEAELVESFRKKMKKWGyHKDFVLDEDSNWFLQGWKGRILFSSSC 698
                      ****************************************************************999999************************ PP

             GRAS 373 W 373
                      W
  Carubv10010943m 699 W 699
                      * PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.819296679IPR005202Transcription factor GRAS
PfamPF035148.4E-103323699IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MDSKNYSRVV NGFEYYDVSF LPNQIPGSGF GVPSSSDFDL RIDQYHQPSN WVPASLDQYS  60
PPADEIDSEN TLLKYVNQLL MEETLAEKQS MSYDSLALRQ TEEMLQQVIN DSHTQSHLPD  120
SITSSSSNSS GDYWNSSNSN SSVSIETAAN STEAEVLYDN HLGDSGVVSF SGSTMLQAGK  180
PANEVLVRSM FSDADSVMQF QRGLEEASKF LPNTDKWIFN LEPEKGRVVQ VKKERDWSGI  240
SKTRKSHHAR EEEDDDLEET RSSKQYAVDV EDGKLTEMFD KVLLFDGECD PQIKEDGENG  300
SSKVQAKKGG GRVKKKSQAV DFRTLLTLCA QSVSAGDKIT ADDLLRQIRK QSSPLGDASQ  360
RVAHFFANAL EARLQGSSGT MIQSYYDSIT SKKRTAAQIL KSYEVFLSAS PFMTLIYFFS  420
NKMILDAAKG ASVLHIIDFG ILYGFQWPMF IQHLGKSKIG LRKLRITGIE LPQHGFRPTE  480
RIQDTGRRLT EYCKRFGIPF EYNAIASKNW ETIRIEEFKI RPNEVLAVNT VLRFKNLRDV  540
TPGEEDCPRD GFLKLIRDMN PNVFLSSTIN GSFNAPFFTT RFKEALFHYS ALFDLFGAAL  600
SRENPERIHF EGEFYGREVM NVIACEGVDR VERPETYKQW QVRMVRAGFK QKPVEAELVE  660
SFRKKMKKWG YHKDFVLDED SNWFLQGWKG RILFSSSCWV PS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-423226995374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10010943m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0224640.0AC022464.4 Genomic sequence for Arabidopsis thaliana BAC F22G5 from chromosome I, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305860.20.0scarecrow-like protein 31
SwissprotQ3EDH00.0SCL31_ARATH; Scarecrow-like protein 31
TrEMBLR0INN70.0R0INN7_9BRAS; Uncharacterized protein
STRINGXP_006305860.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135111728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07520.10.0GRAS family protein