PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10010961m
Common NameCARUB_v10010961mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 228aa    MW: 25933.1 Da    PI: 6.1687
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10010961mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.81.9e-08118164454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +h+ +Er RR++iN+++  L++l+P +     k +  a +L   +eY++sL
  Carubv10010961m 118 SHSLAERVRREKINERLKCLQDLVPGC----YKTMGMAVMLDVIIEYVRSL 164
                      8*************************8....34477788888888888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.74E-10112169No hitNo description
SuperFamilySSF474593.66E-16112181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-16114176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485114164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-6118164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-8120170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:2000488Biological Processpositive regulation of brassinosteroid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MARFEPYNYS IGLNPFLAQL NHNPELINLD SPASTPSSFM LFSNGALVDA HHNNSHVSPN  60
LLQADSRRKC NKEERGSKRR RKRLEEEETM NNEEDDQTHQ KPKDVVHVRA KRGQATDSHS  120
LAERVRREKI NERLKCLQDL VPGCYKTMGM AVMLDVIIEY VRSLENQIEF LSMKLSAASA  180
YYDLNSLDIE PTDIFQGGNM SNAEEMERIL RESVGTQPPN FSSTFPF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16682RRKCNKEERGSKRRRKR
26683RRKCNKEERGSKRRRKRL
36783RKCNKEERGSKRRRKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10010961m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1757570.0AK175757.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH075), complete cds, clone: RAFL22-31-M12.
GenBankAY0888850.0AY088885.1 Arabidopsis thaliana clone 98716 mRNA, complete sequence.
GenBankDQ4462890.0DQ446289.1 Arabidopsis thaliana clone pENTR221-At1g25330 basic helix-loop-helix family protein (At1g25330) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006303530.11e-170transcription factor bHLH75
SwissprotA4D9981e-128BH075_ARATH; Transcription factor bHLH75
TrEMBLR0IHS81e-169R0IHS8_9BRAS; Uncharacterized protein
STRINGXP_006303530.11e-170(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140812024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.11e-123bHLH family protein
Publications ? help Back to Top
  1. Khan M, et al.
    Interplay between phosphorylation and SUMOylation events determines CESTA protein fate in brassinosteroid signalling.
    Nat Commun, 2014. 5: p. 4687
    [PMID:25134617]
  2. Eremina M, et al.
    Brassinosteroids participate in the control of basal and acquired freezing tolerance of plants.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(40): p. E5982-E5991
    [PMID:27655893]
  3. Pfannebecker KC,Lange M,Rupp O,Becker A
    Seed Plant-Specific Gene Lineages Involved in Carpel Development.
    Mol. Biol. Evol., 2017. 34(4): p. 925-942
    [PMID:28087776]