PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10011063m
Common NameCARUB_v10011063mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 262aa    MW: 30174.2 Da    PI: 5.8722
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10011063mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.81.6e-07144187755
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       + r+RR+ri ++ +eL +l+P +     +K + ae+   A +Y+k Lq
  Carubv10011063m 144 VAARKRRRRITEKTQELGKLIPGS-----QKHNTAEMFHAAAKYVKFLQ 187
                      677*******************98.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.49E-7135191No hitNo description
SuperFamilySSF474594.71E-11136201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.43137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-10140201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-8143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-5145187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
DCFIPESDTF FFQAQPQQHP MHQSLDLDEA LSPSLFEFSH LYEPFLPPQD IFLPSPKTEV  60
FNESHDLDAF FPTRKHQKLS NSSFHFNSDE PFFPSSNLNL LDSYITETSN FSEFLVPDFS  120
PAFKVGWSDN KDDTKKPEVS AQSVAARKRR RRITEKTQEL GKLIPGSQKH NTAEMFHAAA  180
KYVKFLQAQI EILQLKQTKM QTWESSKVER EMQFLLASQE IQEKLSTEEV CVVPKEMVQV  240
LKAEGCILRN PRISRDLNKL L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146150RKRRR
2147152KRRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10011063m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305895.20.0transcription factor bHLH52
SwissprotQ9SA821e-127BH052_ARATH; Transcription factor bHLH52
TrEMBLR0INR80.0R0INR8_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006305895.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.11e-129bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]