PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10011077m
Common NameCARUB_v10011077mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ARR-B
Protein Properties Length: 619aa    MW: 70584 Da    PI: 5.7825
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10011077mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like67.62.1e-21381438155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilel...mkvkgLtlehvkSHLQkYRl 55 
                      ++r+ Wt++LH++F+ea++  GG++kA Pk +l++   m++kgLt++++ SHLQk+R+
  Carubv10011077m 381 RQRMIWTEDLHQKFLEAIDMVGGINKANPKVLLDClrgMNIKGLTRNNLSSHLQKHRI 438
                      58****************************987654449******************7 PP
2Response_reg58.34.5e-20301371108
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      +livd + + +  +r+++++ gy ev+  +d+e+al  l  +++d+++++    mpg++Gl++lk+i+++  +lp++++++ ++ e + +a   
  Carubv10011077m  30 LLIVDSNLAALIYMRNLIKRIGY-EVTIEQDAEKALSFLtsCKHDINIVIWEYHMPGINGLQALKSIASKM-DLPVMIMSDDNQTESVMKATLH 121
                      59*********************.***************888999**********************9866.9********************* PP

                      TESEEEESS--HHHHH CS
     Response_reg  93 GakdflsKpfdpeelv 108
                      Ga d+++Kp+ ++ l 
  Carubv10011077m 122 GACDYVMKPVGEDVLA 137
                      *********9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004485.9E-1428140IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521725.98E-2628154IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.5E-2628152No hitNo description
PROSITE profilePS5011033.04829144IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.7E-1631138IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.74E-1731143No hitNo description
Gene3DG3DSA:1.10.10.605.8E-20379442IPR009057Homeodomain-like
SuperFamilySSF466899.5E-12379441IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-15382438IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MLVGNRSRDE VYTSEFTSLL LNQFPASTNL LIVDSNLAAL IYMRNLIKRI GYEVTIEQDA  60
EKALSFLTSC KHDINIVIWE YHMPGINGLQ ALKSIASKMD LPVMIMSDDN QTESVMKATL  120
HGACDYVMKP VGEDVLANIW QHIVRKKVMS KPNITPPVQS DLAQSYGFNQ GQVGSMFVEQ  180
YQNIYQTEER AAIREWSGEI QPVQSDLVHE INVVDQHNEY FKTINQGNDQ QNIERAATRP  240
GITWNGETQP VQSDLVQINV VDQRTEYFKT ICRRSIGQEN IERAATIPGM TWNGEMQPFQ  300
PDLVQMNEYL YQHNDYSQTI NQGNGQQSVA KNDEQAAKKP RVLWDAEEIQ YAPTDLVQTD  360
GFNNGNSVRN TTRRVERKKR RQRMIWTEDL HQKFLEAIDM VGGINKANPK VLLDCLRGMN  420
IKGLTRNNLS SHLQKHRIYL EENQINQQKK ETGWSTAYGA AALPQSFQGA NNVNAAISPY  480
LMNGPGPVNP IQWNQYQKRA VNPIQQNQLQ KGAVNPNQQN QFQKGAVNPN QQYQQNQQYQ  540
ENEQNQFQDG YMTMNTNPFI TNAVSHFPNL DHEIHQPQQQ QYQPSPQFNY GMSNEEPGQA  600
SDIFAPDLGL TYPSFPYM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1376382RKKRRQR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10011077m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006304445.10.0putative two-component response regulator ARR19
SwissprotQ9M9B96e-70ARR19_ARATH; Putative two-component response regulator ARR19
TrEMBLR0IK330.0R0IK33_9BRAS; Uncharacterized protein
STRINGXP_006304445.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM131371629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49190.21e-151response regulator 19