PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10011216m
Common NameCARUB_v10011216mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 183aa    MW: 20938.6 Da    PI: 6.5346
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10011216mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.45.8e-161664250
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     +ie +  r vt+skRrngi  K  ELSvLC+a+va + +s +gk y++ 
  Carubv10011216m 16 KIERDKDRLVTLSKRRNGIYTKLCELSVLCGAQVAFLGYSGSGKPYTFG 64
                     699999*****************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.6767IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-18766IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-22777IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-14929IPR002100Transcription factor, MADS-box
PfamPF003191.7E-171663IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-142944IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-144465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MSSKKTKGKQ KIHIQKIERD KDRLVTLSKR RNGIYTKLCE LSVLCGAQVA FLGYSGSGKP  60
YTFGSPSFQA VVERFLNGQA SSSSSSLQQS LFDAHYEENV QELCRLYNNM VEQTRVEEAK  120
TITAATSVEP LPKDAWWKVD LTEVEDQEKK KQWLEKFERL YENMCDELDA KRQQIDDAEN  180
EK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10011216m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305962.11e-134agamous-like MADS-box protein AGL61
TrEMBLR0IK321e-133R0IK32_9BRAS; Uncharacterized protein
STRINGXP_006305962.11e-134(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46761352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.12e-71AGAMOUS-like 64