PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10011373m
Common NameCARUB_v10011373mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 175aa    MW: 19999.2 Da    PI: 10.7483
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10011373mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.92.3e-051644230
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
              HLH  2 rrahnerErrRRdriNsafeeLrellPka 30
                     r+  n rE+ RR r+++ f+ L +l+ + 
  Carubv10011373m 16 RQQRNLREKERRMRMKHLFSILSSLVSPT 44
                     8899*********************9774 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-111290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.6831463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-61677IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MERARETGEG SSSSLRQQRN LREKERRMRM KHLFSILSSL VSPTRRLPVP QLIDQSVSYM  60
IRLKDKVNYL EEKKRALLGG EVQNRSQGSS LQPKLSIRSR DSTIEMNLVM DVNIKRVLLH  120
ELVSVFEQEG AQVMSANLQN LNNRTFYTII AQAIICRIGI DPSKIEERVM SIIS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12025LREKER
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10011373m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0070671e-90AC007067.4 Genomic sequence for Arabidopsis thaliana BAC T10O24 from Chromosome 1, complete sequence.
GenBankCP0026841e-90CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306058.11e-123transcription factor bHLH168
SwissprotQ9XIJ11e-103BH168_ARATH; Transcription factor bHLH168
TrEMBLR0GT311e-121R0GT31_9BRAS; Uncharacterized protein
STRINGXP_006306058.11e-122(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23822167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.12e-91bHLH family protein