PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10011442m
Common NameCARUB_v10011442mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HD-ZIP
Protein Properties Length: 223aa    MW: 25837.9 Da    PI: 6.8827
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10011442mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.31.1e-1769120556
                      SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++t+ ql+ Lee Fe+++ +  +++  LA+klgL+ +qV vWFqNrRa++k
  Carubv10011442m  69 RKLTPIQLRLLEESFEEDKRLEPKRKLWLAEKLGLKPSQVAVWFQNRRARYK 120
                      4789***********************************************9 PP
2HD-ZIP_I/II115.14.2e-3767157292
      HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      k r+l+  q++lLEesFee+++Lep+rK  la++Lgl+p qvavWFqnrRAR+ktkqlE+d+++Lk++y +lk++ + L +++++L+++++
  Carubv10011442m  67 KTRKLTPIQLRLLEESFEEDKRLEPKRKLWLAEKLGLKPSQVAVWFQNRRARYKTKQLEHDCDSLKASYTKLKTDWDILYSQNQTLKNKVS 157
                      889************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.01E-1853124IPR009057Homeodomain-like
PROSITE profilePS5007115.83962122IPR001356Homeobox domain
SMARTSM003899.8E-1763126IPR001356Homeobox domain
CDDcd000861.67E-1567123No hitNo description
Gene3DG3DSA:1.10.10.601.5E-1869128IPR009057Homeodomain-like
PfamPF000464.4E-1569120IPR001356Homeobox domain
PRINTSPR000317.8E-593102IPR000047Helix-turn-helix motif
PROSITE patternPS00027097120IPR017970Homeobox, conserved site
PRINTSPR000317.8E-5102118IPR000047Helix-turn-helix motif
PfamPF021832.0E-14122163IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MENSDTNDSE VFFWFHNQSH SHKFPPSCFP PSSHTAYHGS SSMSNSEPNT VDEEGVCESH  60
VLREITKTRK LTPIQLRLLE ESFEEDKRLE PKRKLWLAEK LGLKPSQVAV WFQNRRARYK  120
TKQLEHDCDS LKASYTKLKT DWDILYSQNQ TLKNKVSLLK EKLRMQEKLE TQKLGENGIS  180
MKSYNTQYSE EEDGVGNQYS FPELAALGFY YDPTLTSSNL RL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114122RRARYKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10011442m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0003481e-110AC000348.2 Genomic sequence for Arabidopsis thaliana BAC T7N9 from chromosome I, complete sequence.
GenBankCP0026841e-110CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006303997.11e-166homeobox-leucine zipper protein ATHB-54
SwissprotP0CJ651e-130ATB54_ARATH; Homeobox-leucine zipper protein ATHB-54
TrEMBLR0IF281e-164R0IF28_9BRAS; Uncharacterized protein
STRINGXP_006303997.11e-165(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM159081314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27045.11e-133HD-ZIP family protein