PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10011585m
Common NameCARUB_v10011585mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 192aa    MW: 21182.8 Da    PI: 9.9987
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10011585mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-191160255
              AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a++ l+g
  Carubv10011585m 11 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARFLRG 60
                     6********.**********883....5***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.8E-311168IPR001471AP2/ERF domain
SMARTSM003803.0E-341174IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-221169IPR016177DNA-binding domain
CDDcd000183.65E-291168No hitNo description
PROSITE profilePS5103222.4051168IPR001471AP2/ERF domain
PfamPF008473.3E-131160IPR001471AP2/ERF domain
PRINTSPR003675.8E-111223IPR001471AP2/ERF domain
PRINTSPR003675.8E-113450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MASTTCAREV HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT FDTPEEAALA YDGAARFLRG  60
IKAKTNFPSP LSLDLNHIPS APSVATPAPD HNQHNHHQQL WFAAPPPPPP TISDHHHQHH  120
RIFLRTGVLN DKTSDYTSNE APLYFAAPPN AATSPSNGRV VGFPVTSPSP SPATVRRGLS  180
IDLNEPPPLW M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-21768163ATERF1
3gcc_A9e-21768163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10011585m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306124.11e-139ethylene-responsive transcription factor 12
SwissprotQ94ID61e-103ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLR0GSZ21e-137R0GSZ2_9BRAS; Uncharacterized protein
STRINGXP_006306124.11e-138(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.14e-97ERF domain protein 12