PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10011623m

Common Name

CARUB_v10011623mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

NAC

Protein Properties

Length: 252aa MW: 28344.9 Da PI: 7.6871

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10011623m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	94.9	1.2e-29	5	136	6	127
NAM 6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 F+P +eel+++yL++k+++k+ + i+ev+i+++eP dLp +k e++ wyf s+ +k + +r++ra +sg Wk tg++++v++ +g+ Carubv10011623m 5 TFNPPEEELINYYLNNKITEKDDLDGKQINEVNICHYEPADLPGLAKIESShTWYFISPVEK-FGRLNRTKRASRSGHWKITGNSRTVKDVDGN 97 7****************999544477***********6444444426777777665.56789********************** PP NAM 99 lvglkktLvfy..........kgrapkgektdWvmheyr 127 +glkk Lvf + ++ + +k++W++he++ Carubv10011623m 98 PIGLKKFLVFQenkrsstcssSTTNTQQHKANWIIHEFH 136 *******666665555435666677*******9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	33.73	1	155	IPR003441	NAC domain
Pfam	PF02365	1.0E-17	4	136	IPR003441	NAC domain
SuperFamily	SSF101941	7.59E-34	6	154	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MVRCTFNPPE EELINYYLNN KITEKDDLDG KQINEVNICH YEPADLPGLA KIESSHTWYF 60 ISPVEKFGRL NRTKRASRSG HWKITGNSRT VKDVDGNPIG LKKFLVFQEN KRSSTCSSST 120 TNTQQHKANW IIHEFHSFLH HPNQDAYVLC KLKKNTRTRR TAAVADASLA MIDLSLTSDP 180 VVLNHSQPII LEGGESSGLP SGENGHVYGP NTRENSNMFQ PEVVVDDDVI LRSKSEIRRT 240 HMATPTMLDA Q*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-13	6	155	23	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-13	6	155	23	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-13	6	155	23	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-13	6	155	23	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-13	6	155	26	168	NAC domain-containing protein 19
3swm_B	1e-13	6	155	26	168	NAC domain-containing protein 19
3swm_C	1e-13	6	155	26	168	NAC domain-containing protein 19
3swm_D	1e-13	6	155	26	168	NAC domain-containing protein 19
3swp_A	1e-13	6	155	26	168	NAC domain-containing protein 19
3swp_B	1e-13	6	155	26	168	NAC domain-containing protein 19
3swp_C	1e-13	6	155	26	168	NAC domain-containing protein 19
3swp_D	1e-13	6	155	26	168	NAC domain-containing protein 19
4dul_A	1e-13	6	155	23	165	NAC domain-containing protein 19
4dul_B	1e-13	6	155	23	165	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10011623m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	ATAC022287	1e-102	AC022287.9 Arabidopsis thaliana chromosome III BAC T27C4 genomic sequence, complete sequence.
GenBank	CP002686	1e-102	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023632870.1	1e-143	NAC domain-containing protein 1
TrEMBL	R0GLB4	0.0	R0GLB4_9BRAS; Uncharacterized protein
STRING	XP_006303643.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14815	15	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04430.1	1e-83	NAC domain containing protein 49

Link Out ? help Back to Top
Phytozome	Carubv10011623m
Entrez Gene	17900876