PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10011628m

Common Name

CARUB_v10011628mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bHLH

Protein Properties

Length: 227aa MW: 25524.8 Da PI: 6.778

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10011628m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.8	6.9e-12	70	116	4	53
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 ++ rE++RRdr+N++f eL ++l + + +K +K++i A++ +++ Carubv10011628m 70 SKACREKQRRDRLNDKFTELSSILEPG---RTPKTDKVSIINDAIRMVNH 116 5678********************8...8************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.627	66	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.58E-8	69	122	No hit	No description
SuperFamily	SSF47459	6.15E-13	70	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.4E-12	70	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-9	70	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-8	72	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MVSPENTNWL SDYPLIDGVF SDQNPSFPWQ IDGSSSVSVE VDGFLCDSDV IKEPGSKKRI 60 KTESCTGSSS KACREKQRRD RLNDKFTELS SILEPGRTPK TDKVSIINDA IRMVNHARDE 120 AQKLKDLNSS LQEKIKELKD EKNELRDEKH KLKTEKERIE QQLKAINTQP QPQPCFLPNQ 180 PTLSQAQAPG SKLVPFTTYP SFAMWQFMPP AAVDTSQDHV LRPPVA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10011628m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488632	0.0	AF488632.1 Arabidopsis thaliana clone bHLH115 putative bHLH transcription factor mRNA, complete cds.
GenBank	AY085619	0.0	AY085619.1 Arabidopsis thaliana clone 16284 mRNA, complete sequence.
GenBank	BT002433	0.0	BT002433.1 Arabidopsis thaliana bHLH transcription factor, putative (At1g51070) mRNA, complete cds.
GenBank	BT006273	0.0	BT006273.1 Arabidopsis thaliana At1g51070 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006304584.1	1e-167	transcription factor bHLH115
Swissprot	Q9C682	1e-155	BH115_ARATH; Transcription factor bHLH115
TrEMBL	R0GNJ4	1e-166	R0GNJ4_9BRAS; Uncharacterized protein
STRING	XP_006304584.1	1e-166	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1437	28	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51070.1	1e-152	bHLH family protein

Link Out ? help Back to Top
Phytozome	Carubv10011628m
Entrez Gene	17897417

Publications ? help Back to Top
Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511]