PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10011792m
Common NameCARUB_v10011792mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 259aa    MW: 29443.4 Da    PI: 8.1535
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10011792mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.6e-1270122155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +r++h+ +Er+RR++  + +  Lr +lP+      ++K s ++ +e+A +YIk+Lq
  Carubv10011792m  70 KRAKHKDIERQRRQEATTLYKSLRFILPShY---IKGKRSSSDHVEEAGNYIKDLQ 122
                      79***************************77...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-1266141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.30E-867126No hitNo description
PROSITE profilePS5088812.41169121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-970139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-970122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDFADSSSFT LDFANENYLD FSSLITPSTL ISFQEPNPCN PIIQNDGRQK VRETTMASEI  60
RKGDDEPKNK RAKHKDIERQ RRQEATTLYK SLRFILPSHY IKGKRSSSDH VEEAGNYIKD  120
LQKKIKEISE KRDRIKSTVT HRSSSTSRCS LRPLASSTSS TCSCFGDTHM AVVVRPCLIG  180
LEVVVSCCLR HESFLSSVLQ LLTQEQYCLN VVSCISTRQP QSFIHTIVSE VVEGIEVYHS  240
EIHEKIMKMG RSSYEYLY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16981KRAKHKDIERQRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10011792m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006303696.10.0transcription factor bHLH55
SwissprotQ9LN951e-123BH055_ARATH; Transcription factor bHLH55
TrEMBLR0I2Y40.0R0I2Y4_9BRAS; Uncharacterized protein
STRINGXP_006303696.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62281843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12540.11e-120bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Wisman E, et al.
    Knock-out mutants from an En-1 mutagenized Arabidopsis thaliana population generate phenylpropanoid biosynthesis phenotypes.
    Proc. Natl. Acad. Sci. U.S.A., 1998. 95(21): p. 12432-7
    [PMID:9770503]