PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10011841m
Common NameCARUB_v10011841mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 368aa    MW: 40547.5 Da    PI: 8.1019
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10011841mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.21.6e-12183227347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+ E+++++ + ++ G+g+Wk I++ + k Rt+ q+ s+ qky
  Carubv10011841m 183 PWTENEHKRFLIGLQKVGKGDWKGISKNFVKSRTPTQVASHAQKY 227
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.873176232IPR017930Myb domain
SuperFamilySSF466891.4E-16178232IPR009057Homeodomain-like
TIGRFAMsTIGR015574.5E-17179230IPR006447Myb domain, plants
SMARTSM007178.6E-7180230IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-10182227IPR009057Homeodomain-like
CDDcd001672.11E-6183228No hitNo description
PfamPF002491.6E-9183227IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MHVVEVESPY LNLDGIYDHD TTQQGRRRRS KALSQIHSTP PRLLLICTVL IKNRFPKGKS  60
KSDARAISEK VFFSPSFLLM AAVSSSSETG DSGAAGKRDE IMLFGVRVVI DPMRKCVSLN  120
NLSDYEEKSS PDDEIPKTVV PGAGDGDDKN ETVIVADGYA SANDAVHISC SSAGNRERKR  180
GVPWTENEHK RFLIGLQKVG KGDWKGISKN FVKSRTPTQV ASHAQKYFLR RTNLNRRRRR  240
SSLFDITTET VTEMPMEQDQ TQENSPLPET NVSSGHQVMQ VDAEVAVMTK TESSAQTFNL  300
NDSYLVPVTF QANPAFNLNT EAAPLSLNLS LASSFNLNEQ PNSRHSAFTM MPSFSDGDSN  360
SSIIRVA*
Functional Description ? help Back to Top
Source Description
UniProtBinds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00149DAPTransfer from AT1G19000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10011841m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023644829.10.0transcription factor MYB1R1
SwissprotQ2V9B03e-56MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLR0IPK70.0R0IPK7_9BRAS; Uncharacterized protein
STRINGXP_006306200.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24612669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19000.21e-151MYB_related family protein
Publications ? help Back to Top
  1. Shin D, et al.
    Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance.
    Plant Physiol., 2011. 155(1): p. 421-32
    [PMID:21030505]