PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10011902m
Common NameCARUB_v10011902mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 166aa    MW: 19049.9 Da    PI: 10.2143
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10011902mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.97e-22312214128
              NAM  14 lvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknra......tksgyWkatgkdkevlskkge 98 
                      lv++yL++++++ k     +ik++++y++ePw Lp+ v++   +ekew++F+kr  k+  gk +nr+         g+W ++g+++++l +++ 
  Carubv10011902m   3 LVDQYLRRRIDTGKE---GFIKDIKLYEYEPWLLPH-VNNdlfGEKEWFYFVKRTLKA--GKTPNRKvlgrggSIVGTWTTSGSKEAILGRNKV 90 
                      89**********994...56***************4.333356899*******99886..667888534444433799**************** PP

              NAM  99 lvglkktLvfykg..rapkgektdWvmheyrl 128
                      ++g k  L +yk    + kg +t W+m ey l
  Carubv10011902m  91 VIGHKAELSYYKDvkGQVKGDSTGWCMTEYWL 122
                      ***********643378899**********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.2481140IPR003441NAC domain
SuperFamilySSF1019418.24E-253140IPR003441NAC domain
PfamPF023653.4E-113121IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MTLVDQYLRR RIDTGKEGFI KDIKLYEYEP WLLPHVNNDL FGEKEWFYFV KRTLKAGKTP  60
NRKVLGRGGS IVGTWTTSGS KEAILGRNKV VIGHKAELSY YKDVKGQVKG DSTGWCMTEY  120
WLASKNDEFQ ELVLCYIRGK KKQVKNVSSY SGTNRAFAPR GDIIAR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10011902m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006303744.21e-118NAC domain-containing protein 19
TrEMBLR0GL051e-119R0GL05_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006303744.11e-120(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145441119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03490.19e-21NAC domain containing protein 6