PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10012206m
Common NameCARUB_v10012206mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 448aa    MW: 51894.4 Da    PI: 4.5029
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10012206mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM81.71.6e-25141432128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknra......tksgyWkat 86 
                      p+G+rF P+d  lv  yL++ ve+k+ ++   ++++d+y+++Pw Lp+ v++   ++kewy+F++r k++++  +++r+       + gyW++ 
  Carubv10012206m  14 PVGLRFGPEDLGLVRLYLRNMVERKQSDF---LTTLDVYQADPWLLPH-VSNplfKKKEWYYFVPRTKRHRN--KPRRTvpprggSEGGYWRSG 101
                      89************************666...99*************4.233355889********999876..45554345555789****** PP

              NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       k+ +v+++++ ++g k+ L++++  + k +kt W+m ey l
  Carubv10012206m 102 VKKVDVVDENKFVMGHKQPLTYHSIVHGKDVKTGWLMTEYLL 143
                      ********999************9999999**********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-328160IPR003441NAC domain
PROSITE profilePS5100533.49613161IPR003441NAC domain
PfamPF023651.7E-1414142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
LLRIHDMRAP YDHPVGLRFG PEDLGLVRLY LRNMVERKQS DFLTTLDVYQ ADPWLLPHVS  60
NPLFKKKEWY YFVPRTKRHR NKPRRTVPPR GGSEGGYWRS GVKKVDVVDE NKFVMGHKQP  120
LTYHSIVHGK DVKTGWLMTE YLLPKPDNEF QDLVLCHIRD KTKTKVDKIV NQFPRTQPQL  180
AHTTNNILAN QLVQEAGFTG FADEPETIML EGQEDLDTTE QQQDEEIPII PLAHAQIHDD  240
NNNNNNNVMM TNQQVQEEAD LTSFADELDM PMQMLKGEKD RVVQLKQQKL YEDMLIFSPT  300
QSGDNNNDDT VNMMSIQLAD HLIGFGDKLK TMRLGRQEEC DVTQHQQKQL EEEIPIIPPT  360
MQNNNTNDDM MAWNQKVSDI EEFLMKDTEG EDDVTEQQQE ICELLQPIYQ AQEDWGQLVD  420
QDDTMMMIDN PNNALTLGNY ELIDRTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-151416118165NO APICAL MERISTEM PROTEIN
1ut4_B2e-151416118165NO APICAL MERISTEM PROTEIN
1ut7_A2e-151416118165NO APICAL MERISTEM PROTEIN
1ut7_B2e-151416118165NO APICAL MERISTEM PROTEIN
3swm_A2e-151416121168NAC domain-containing protein 19
3swm_B2e-151416121168NAC domain-containing protein 19
3swm_C2e-151416121168NAC domain-containing protein 19
3swm_D2e-151416121168NAC domain-containing protein 19
3swp_A2e-151416121168NAC domain-containing protein 19
3swp_B2e-151416121168NAC domain-containing protein 19
3swp_C2e-151416121168NAC domain-containing protein 19
3swp_D2e-151416121168NAC domain-containing protein 19
4dul_A2e-151416118165NAC domain-containing protein 19
4dul_B2e-151416118165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10012206m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023645676.10.0NAC domain-containing protein 6
TrEMBLR0I9X60.0R0I9X6_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006306331.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145441119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03490.11e-42NAC domain containing protein 6