PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10012426m
Common NameCARUB_v10012426mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 600aa    MW: 66625.3 Da    PI: 5.4044
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10012426mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.81.2e-08496544348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v ++G g W+ I r        Rt  ++k++w++++
  Carubv10012426m 496 AWTLSEVVKLVEGVSKHGVGKWSEIKRLSFsssAYRTSVDLKDKWRNLR 544
                      7***************************999**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.333489548IPR017930Myb domain
SuperFamilySSF466898.97E-15491546IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-11491549IPR009057Homeodomain-like
SMARTSM007172.3E-8493546IPR001005SANT/Myb domain
CDDcd116601.08E-19495545No hitNo description
PfamPF002496.2E-6496544IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MFGTVEDYEE MFRDSIFQSR SGSLSSRNQT GNPVPYKLVR VAGDGRLVPA TDEEMLEVKE  60
LLKNNENDMP VLPDPIPTED ILDEGSPSQF LQLESFEGLF ESETAEANTE NLNSRLESQM  120
LIALPETQFK ITSVLCENEE QVQSEDLLRE PLLFPSNGCS MIQSGDVSPY LNATGSPKEP  180
ALSTAASQTE FSRVAGETYL DNLSIKALQE TFRAKFGRET TCKDKQWLKR RITLGSINSC  240
VVPTTSLTIA NNKLISGGQD SGEAFSKDAV DEERATESKD TPSSPDCTKG HSNDFGYSPV  300
ETFVDHYSGN EDFEGEYRSA KRVRKPTRRY IEEISKPDEK QQNDESMIPS KEQSSIQAVS  360
SGGRVVITRM VSLAGSRVQV PYVSHVRRSR PRENIMALGE FHSKSSEVKG TPDESNLNLS  420
PSQWNNDVNR VSGVKSASGP VQKESRKDHL KLIFNEVDQD ITEPENLDSP GDSSDDNNSV  480
DLPVTQIAIR RKHHRAWTLS EVVKLVEGVS KHGVGKWSEI KRLSFSSSAY RTSVDLKDKW  540
RNLRRACLSQ TASNRMGGLK KQGSMAIPSE IMLQVKELSQ KQSPVTKARV VKRSRNGLL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10012426m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006304808.10.0uncharacterized protein LOC17897993 isoform X1
TrEMBLR0GPJ10.0R0GPJ1_9BRAS; Uncharacterized protein
STRINGXP_006304808.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43642649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.10.0TRF-like 3