PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10012447m

Common Name

CARUB_v10012447mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

WOX

Protein Properties

Length: 201aa MW: 22529.2 Da PI: 6.5185

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10012447m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.3	4.2e-21	77	137	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t++ql++Le+ +++ + +p+ ++++e+A++l ++te++V++WFqNrRa+ k+ Carubv10012447m 77 RHRWTPTSKQLQILENIYKEgSGTPNPRRIKEIATELsehgQITEKNVYNWFQNRRARSKR 137 89***************99************************************97 PP
2	Wus_type_Homeobox	102.5	2.9e-33	76	139	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPt++Q++iLe++yk+G tPn ++i++i++eL+e+G+i++kNV++WFQNr+aR+++kq Carubv10012447m 76 TRHRWTPTSKQLQILENIYKEGSGTPNPRRIKEIATELSEHGQITEKNVYNWFQNRRARSKRKQ 139 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.07E-18	73	143	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.3E-16	73	142	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.981	73	138	IPR001356	Homeobox domain
SMART	SM00389	1.9E-13	75	142	IPR001356	Homeobox domain
Pfam	PF00046	8.2E-19	77	137	IPR001356	Homeobox domain
CDD	cd00086	1.50E-14	77	139	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MEQESLNGTY DGRVMTEEQM ETLRKQIAIY AIICDQLVLL HNSLSSFPPL SSGMNPMGGG 60 YFDPMVASSS AHGMSTRHRW TPTSKQLQIL ENIYKEGSGT PNPRRIKEIA TELSEHGQIT 120 EKNVYNWFQN RRARSKRKQP QTTTMAGQTD DAAVTTEERS YGDSGGFESY EHILFPSPDR 180 GIEDLLSSKG KFMENKFHTG *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	138	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10012447m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006306476.1	1e-150	WUSCHEL-related homeobox 14
Swissprot	Q9LM84	1e-113	WOX14_ARATH; WUSCHEL-related homeobox 14
TrEMBL	R0IAB3	1e-149	R0IAB3_9BRAS; Uncharacterized protein
STRING	XP_006306476.1	1e-149	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12211	17	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20700.1	1e-115	WUSCHEL related homeobox 14

Link Out ? help Back to Top
Phytozome	Carubv10012447m
Entrez Gene	17896983

Publications ? help Back to Top
Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997]