PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10012547m
Common NameCARUB_v10012547mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 120aa    MW: 14010.6 Da    PI: 3.8794
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10012547mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.44.8e-174781898
                     --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                     +p  f  e+  + + ++t+ l d sgrsW+v++  +k ++ ++lt GW++Fvk+n+L++g  + F +d +++f  +v +f 
  Carubv10012547m  4 IPLGFN-EYFPD-PLPITVDLLDYSGRSWTVRM--KKIGENVFLTLGWENFVKDNNLEDGKYLNFIYDCDRTF--YVIIFA 78
                     777776.55323.4899****************..*******************************9987776..887775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010194.3E-10180IPR003340B3 DNA binding domain
PROSITE profilePS5086315.383180IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-21282IPR015300DNA-binding pseudobarrel domain
PfamPF023624.3E-15378IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.1E-18382IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MVAIPLGFNE YFPDPLPITV DLLDYSGRSW TVRMKKIGEN VFLTLGWENF VKDNNLEDGK  60
YLNFIYDCDR TFYVIIFAHD MCSEFRGFPQ VIVDVDDYET CEDEDEDVEE AQQQKENNK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A1e-4728224104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10012547m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023632724.11e-83B3 domain-containing protein At1g16640
SwissprotQ9FX772e-54Y1664_ARATH; B3 domain-containing protein At1g16640
TrEMBLR0GU126e-83R0GU12_9BRAS; Uncharacterized protein
STRINGXP_006306524.11e-83(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157511416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.12e-55B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]