PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10012603m
Common NameCARUB_v10012603mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 169aa    MW: 20183.3 Da    PI: 9.0134
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10012603mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.12e-121058149
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     k+ien++ r  tf +R+  i+ KA ELS   d+ev v+++s+t+  y++
  Carubv10012603m 10 KFIENERSRLSTFHRRQCSIFEKADELSKIPDVEVRVLLVSPTNISYTF 58
                     79******************************************99999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554558.5E-16273IPR002100Transcription factor, MADS-box
SMARTSM004323.4E-11261IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.75262IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-7424IPR002100Transcription factor, MADS-box
PfamPF003193.3E-121158IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-72439IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-73960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MAPRQKREIK FIENERSRLS TFHRRQCSIF EKADELSKIP DVEVRVLLVS PTNISYTFGK  60
PSLINNVERN LMKELEQLEM HEELLRKRNQ EELEKSKMLE KVELEDLVAF KEKLEALRAD  120
RKRRHEEMKA SATLLMLSEE TENKKMKIEA DPREKYELRP RIPRNYVE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120146RKRRHEEMKASATLLMLSEETENKKMK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10012603m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006304866.11e-115agamous-like MADS-box protein AGL30
TrEMBLR0I6231e-114R0I623_9BRAS; Uncharacterized protein
STRINGXP_006304866.11e-115(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16164513
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47760.17e-35AGAMOUS-like 102