PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10012756m
Common NameCARUB_v10012756mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GeBP
Protein Properties Length: 248aa    MW: 28080.8 Da    PI: 5.7823
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10012756mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57332.81.9e-1077109234
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddi 34 
                      +fq +wse+De++lLqGli++k++tg ++ + +
  Carubv10012756m  77 NFQHVWSEDDEVALLQGLINYKTDTGGEALEST 109
                      79************************8766654 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MVFEGSFKVD PKILVLTEKK VEDGVTVKKV EAPMKPVVTE KQEVKRYVEN RSSETTNEGD  60
SVNRGKVSEK KEKKKPNFQH VWSEDDEVAL LQGLINYKTD TGGEALESTG KSKRVASLKH  120
EDAERVSSSL VRTLVYVGVD ELAAQQGLSM IALEDKKRYE EQKALQAREF DFYSEKAKFL  180
HQITLVHFGV DELAAQQGLS RLASEDMKRY EEQWKALQAR EFDFYSEKAG LLHQMLAEMV  240
EASRSNV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10012756m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023633405.11e-117probable transcription factor At1g11510
TrEMBLR0GLZ11e-179R0GLZ1_9BRAS; Uncharacterized protein
STRINGXP_006279315.11e-180(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3360422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.11e-19DNA-binding storekeeper protein-related transcriptional regulator