PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10012777m
Common NameCARUB_v10001064mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family G2-like
Protein Properties Length: 150aa    MW: 17158.1 Da    PI: 5.14
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10012777mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like44.24.3e-142148128
          G2-like  1 kprlrWtpeLHerFveaveqLGGsekAt 28
                     k+r+rWtpeLHe+Fveav+qLGGse+  
  Carubv10012777m 21 KQRMRWTPELHEAFVEAVNQLGGSEREP 48
                     79**********************9854 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.68E-61952IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-121962IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-82149IPR006447Myb domain, plants
PfamPF143796.5E-1469101IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MVLSEEQLSG RNSSSSVATS KQRMRWTPEL HEAFVEAVNQ LGGSEREPQE KKMTSMEDIK  60
SLDMKTSVEF TQALRLQMEV QKRLHEQLEI QRTLQLQIEK QIQENKSSSP EELPKQCNTT  120
SAEVEYGLET RTDNRTESAS ASRKRVRED*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10012777m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0459433e-66AY045943.1 Arabidopsis thaliana unknown protein (At5g29000) mRNA, partial cds.
GenBankAY0851543e-66AY085154.1 Arabidopsis thaliana clone 13378 mRNA, complete sequence.
GenBankBT0023443e-66BT002344.1 Arabidopsis thaliana clone C104936 unknown protein (At5g29000) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023636842.11e-82protein PHR1-LIKE 1 isoform X2
RefseqXP_023636843.19e-83protein PHR1-LIKE 1 isoform X3
RefseqXP_023636844.14e-83protein PHR1-LIKE 1 isoform X4
RefseqXP_023636845.14e-83protein PHR1-LIKE 1 isoform X4
SwissprotQ8GUN51e-73PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBLR0H7993e-81R0H799_9BRAS; Uncharacterized protein
STRINGXP_006287842.16e-82(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85627117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.32e-76G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Bonnot C, et al.
    A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana.
    New Phytol., 2016. 209(1): p. 161-76
    [PMID:26243630]
  4. Aleksza D,Horváth GV,Sándor G,Szabados L
    Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation.
    Plant Physiol., 2017. 175(1): p. 555-567
    [PMID:28765275]