PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10012855m

Common Name

CARUB_v10012855mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

MYB_related

Protein Properties

Length: 1127aa MW: 126965 Da PI: 8.392

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10012855m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.1	9.6e-09	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE e+++++ +++G++ Wk++a+ + R+++++ Carubv10012855m 46 QWSKEELERFYEGYRKFGKE-WKKVAAFVH-SRSAEMV 81 6*****************.******9.9999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.31E-10	42	92	IPR009057	Homeodomain-like
SMART	SM00717	2.0E-4	43	91	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-7	46	81	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-5	46	82	IPR009057	Homeodomain-like
CDD	cd00167	3.42E-5	47	89	No hit	No description
Pfam	PF06584	8.2E-30	603	702	IPR033471	DIRP domain
SMART	SM01135	2.7E-61	603	704	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1127 aa Download sequence Send to blast
MAPSRSKKSK YKKTPRSKAV SPQKDDENMS KTKQRKRKLS DMLGPQWSKE ELERFYEGYR 60 KFGKEWKKVA AFVHSRSAEM VEALYTMNKA YLSLPEGTAS VVGLNAMMTD HYSVLHGGSD 120 SEQENNEGTE TPRSAPKRSK VKSSDHPSTG LEGLSDRLQF RSSSGFLPSL KKRRTETLPR 180 AVGKRTPRIP ISYTLEKDTR ERYLSTVKRG LSQKGDDTDD DMEHEIALAL AEASQRGGST 240 KNSYTPNKKA KMYLSDNKGE RMRADIDLAI AKLRAGDMED VHCEPSSEST EADNADYSGG 300 RNDLTHGEGT SATEVQQTGR KYYRRRLGIK KEDAKEACSG TDEAPSLGAL DEKFEPERDE 360 KFLKLTYKFS RRKSKKSLFT ADEDTACDAL QTLADLSLMM PETATDTESS VQVEEKRAGK 420 AYVSDLKGTD PASIKSSFHR NSKQRRSGSS DLCNTEAERK SPSSSLIRKR RQKTPPAKVT 480 KDELAASSQV IEPCNNKGIG EGNKPVGRGK RSASIRNSHE KKPVKPQDRT FSSNNIVEED 540 ESAPSNAVIK KQVNLPTKVR SRRKIVTEKP LTIDDGKNSE TLEKFSHCIS SERARRWCLF 600 EWFYSAIDYP WFARQEFVEY LDHVGLGHVP RLTRVEWGVI RSSLGKPRRF SAQFLKEEKE 660 KLYLYRDSVR KHYDELNTGM REGLPMDLAR PLNVSQRVIS LHPKLREIHD GSVLTVDHCR 720 YRIQFDHPEL GVEFVKDTEC MPLNPLENMP ASLAKHYAFP NYHIQNTSEE KMQERVKEST 780 PEGHLKLSCE TGHLLSPPNY NISNSLKQEK VDISSLNPQA LDGVDEALDL PLLNSQPSTI 840 GHIQAREADV QALSELTRAL DKKELVLREL KCMNNEVVES QKDGHNALKE SESFKKQYAA 900 VLFQLSEINE QVSLALLGLR QRNTYQENVP YASIRHMSQS GEPDGQLTYI DSYASDTNGF 960 HVSEIVETSR IQARKMVYRA VQALASLRKD ENNVVTMEEV IDFVNNHLSI DQTEVSSVHQ 1020 RQGAQDQRLP FTLNSPSSTP ANDIHQNPPD QNDLQIPSEL VSRCMATLLM IQRCTERQFP 1080 PSEVAQVLDS AVASLQPCCS QNLPIYTEIQ KCMGIIRNQI LALVPS*

Sequence ? help Back to Top

Protein Sequence Length: 1127 aa Download sequence Send to blast

MAPSRSKKSK YKKTPRSKAV SPQKDDENMS KTKQRKRKLS DMLGPQWSKE ELERFYEGYR  60
KFGKEWKKVA AFVHSRSAEM VEALYTMNKA YLSLPEGTAS VVGLNAMMTD HYSVLHGGSD  120
SEQENNEGTE TPRSAPKRSK VKSSDHPSTG LEGLSDRLQF RSSSGFLPSL KKRRTETLPR  180
AVGKRTPRIP ISYTLEKDTR ERYLSTVKRG LSQKGDDTDD DMEHEIALAL AEASQRGGST  240
KNSYTPNKKA KMYLSDNKGE RMRADIDLAI AKLRAGDMED VHCEPSSEST EADNADYSGG  300
RNDLTHGEGT SATEVQQTGR KYYRRRLGIK KEDAKEACSG TDEAPSLGAL DEKFEPERDE  360
KFLKLTYKFS RRKSKKSLFT ADEDTACDAL QTLADLSLMM PETATDTESS VQVEEKRAGK  420
AYVSDLKGTD PASIKSSFHR NSKQRRSGSS DLCNTEAERK SPSSSLIRKR RQKTPPAKVT  480
KDELAASSQV IEPCNNKGIG EGNKPVGRGK RSASIRNSHE KKPVKPQDRT FSSNNIVEED  540
ESAPSNAVIK KQVNLPTKVR SRRKIVTEKP LTIDDGKNSE TLEKFSHCIS SERARRWCLF  600
EWFYSAIDYP WFARQEFVEY LDHVGLGHVP RLTRVEWGVI RSSLGKPRRF SAQFLKEEKE  660
KLYLYRDSVR KHYDELNTGM REGLPMDLAR PLNVSQRVIS LHPKLREIHD GSVLTVDHCR  720
YRIQFDHPEL GVEFVKDTEC MPLNPLENMP ASLAKHYAFP NYHIQNTSEE KMQERVKEST  780
PEGHLKLSCE TGHLLSPPNY NISNSLKQEK VDISSLNPQA LDGVDEALDL PLLNSQPSTI  840
GHIQAREADV QALSELTRAL DKKELVLREL KCMNNEVVES QKDGHNALKE SESFKKQYAA  900
VLFQLSEINE QVSLALLGLR QRNTYQENVP YASIRHMSQS GEPDGQLTYI DSYASDTNGF  960
HVSEIVETSR IQARKMVYRA VQALASLRKD ENNVVTMEEV IDFVNNHLSI DQTEVSSVHQ  1020
RQGAQDQRLP FTLNSPSSTP ANDIHQNPPD QNDLQIPSEL VSRCMATLLM IQRCTERQFP  1080
PSEVAQVLDS AVASLQPCCS QNLPIYTEIQ KCMGIIRNQI LALVPS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10012855m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ583497	0.0	AJ583497.1 Arabidopsis thaliana mRNA for always early 3 protein (Ataly3 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023641610.1	0.0	protein ALWAYS EARLY 3
Refseq	XP_023641611.1	0.0	protein ALWAYS EARLY 3
Refseq	XP_023641612.1	0.0	protein ALWAYS EARLY 3
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	R0HWF7	0.0	R0HWF7_9BRAS; Uncharacterized protein
STRING	XP_006296867.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12714	24	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	Carubv10012855m
Entrez Gene	17891686

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]